Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 6.7e-227 790.4 422 100.0
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 2.8e-180 635.6 428 84.3
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 7.4e-149 531.2 432 73.8
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 6.5e-113 411.8 350 72.9
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 1.3e-100 370.9 444 55.0
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.8e-100 369.8 442 55.7
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 1.2e-98 364.4 446 54.7
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 2.0e-98 363.6 454 57.7
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 7.5e-85 318.5 437 51.5
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 3.6e-79 299.7 462 47.0
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 8.0e-79 298.5 462 47.0
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 2.0e-53 214.2 439 39.6
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 5.4e-51 206.1 475 36.6
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.0e-49 201.8 465 36.8
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.3e-49 201.4 472 35.4
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 7.3e-48 195.7 450 36.2
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.4e-46 191.4 454 36.8
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 9.0e-46 188.7 464 34.1
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 5.8e-45 186.0 449 36.5
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 1.3e-44 184.9 432 34.5
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 2.2e-44 184.1 453 36.9
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.4e-43 180.6 450 35.8
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 5.4e-43 179.5 471 34.8
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.4e-43 179.5 471 34.2
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 7.1e-43 179.1 449 35.9
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 7.1e-43 179.1 444 35.6
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 2.1e-42 177.6 474 34.4
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 2.3e-41 174.1 495 34.3
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 6.6e-41 172.6 439 34.4
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 8.7e-41 172.2 476 33.0
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.3e-40 169.9 466 35.6
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 5.6e-40 169.5 448 33.9
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 9.6e-40 168.7 423 35.9
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.6e-40 168.7 456 34.6
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 8.1e-39 165.6 429 34.3
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 1.8e-38 164.5 431 33.6
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-38 164.5 430 34.9
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-38 164.5 431 33.9
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 1.8e-38 164.5 431 33.9
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.4e-38 164.1 448 32.1
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 5.8e-37 159.5 433 32.8
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 7.6e-37 159.1 445 35.1
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 1.7e-36 157.9 446 31.8
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 3.8e-36 156.8 487 33.5
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 4.9e-36 156.4 456 33.6
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 4.9e-36 156.4 455 32.7
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 6.4e-36 156.0 428 33.6
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 8.4e-36 155.6 468 33.3
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 8.4e-36 155.6 438 33.3
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.4e-35 154.8 446 33.0
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.2e-35 153.7 421 32.8
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.1e-34 151.0 445 31.0
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.1e-34 151.0 456 35.3
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.6e-34 149.8 438 32.6
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.0e-33 148.7 431 33.9
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-33 148.3 430 35.3
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.3e-33 147.5 421 31.8
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 3.0e-33 147.1 426 31.9
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 2.5e-32 144.1 441 34.0
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.6e-31 141.4 472 32.4
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.1e-30 138.7 450 30.2
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.8e-30 137.9 496 29.4
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 5.3e-30 136.3 453 28.3
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 5.3e-30 136.3 419 32.0
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 3.4e-29 133.7 469 31.3
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 4.5e-29 133.3 442 31.4
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 5.8e-29 132.9 477 32.5
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 1.3e-28 131.7 208 41.3
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.2e-28 131.0 488 29.7
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.5e-27 127.5 462 30.1
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 3.2e-27 127.1 366 33.1
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 3.2e-27 127.1 495 28.1
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 2.1e-26 124.4 418 33.3
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 6.0e-26 122.9 446 28.7
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 7.9e-26 122.5 432 30.6
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.0e-25 120.6 472 30.9
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 3.0e-25 120.6 477 28.5
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 8.7e-25 119.0 484 27.5
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 8.7e-25 119.0 209 35.9
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 1.1e-24 118.6 458 27.7
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.5e-24 117.5 483 28.6
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 4.3e-24 116.7 494 28.3
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.6e-24 115.5 428 30.8
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.6e-23 114.8 474 29.5
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.7e-23 113.6 474 29.7
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.8e-23 113.2 480 27.3
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 8.2e-23 112.5 433 30.9
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.4e-22 111.7 479 28.0
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 6.9e-22 109.4 502 26.9
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 1.2e-21 108.6 429 31.0
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 1.2e-21 108.6 429 31.0
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.5e-21 108.2 473 27.3
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.5e-21 108.2 391 29.9
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.0e-21 107.8 488 28.1
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 4.5e-21 106.7 358 30.4
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 4.5e-21 106.7 516 25.8
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 5.8e-21 106.3 363 31.1
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 2.2e-20 104.4 476 26.9
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 2.9e-20 104.0 462 29.4
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.9e-20 103.2 443 28.0
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.9e-20 103.2 419 29.1
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 1.1e-19 102.1 478 26.8
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.4e-19 101.7 426 30.3
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 1.4e-19 101.7 421 29.9
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 1.9e-19 101.3 421 30.6
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 4.2e-19 100.1 421 29.0
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 5.5e-19 99.8 477 26.4
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 5.5e-19 99.8 488 27.9
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 7.1e-19 99.4 507 26.4
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 9.3e-19 99.0 481 27.7
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.6e-18 98.2 484 27.9
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.1e-18 97.8 464 27.8
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 6.0e-18 96.3 428 29.2
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.0e-17 95.5 477 26.0
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 5.1e-17 93.2 415 27.0
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 6.7e-17 92.8 460 28.0
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 8.7e-17 92.4 514 25.1
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.9e-16 91.3 485 26.0
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 7.4e-16 89.4 474 25.1
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 7.4e-16 89.4 447 28.6
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 1.6e-15 88.2 434 27.4
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.6e-15 88.2 516 25.8
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.6e-15 88.2 435 28.3
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 4.8e-15 86.7 456 25.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.1e-14 84.0 473 26.6
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 4.1e-14 83.6 281 30.2
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 1.2e-13 82.0 228 31.1
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 2.0e-13 81.3 467 24.6
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 2.0e-13 81.3 455 23.5
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 2.6e-13 80.9 475 24.0
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 3.4e-13 80.5 490 24.7
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.5e-13 80.1 483 24.4
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 7.7e-13 79.3 454 25.3
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 1.0e-12 79.0 541 23.7
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 1.3e-12 78.6 462 24.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.9e-12 77.4 217 33.2
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 3.8e-12 77.0 435 24.8
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 6.5e-12 76.3 491 24.0
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 8.5e-12 75.9 486 25.7
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.1e-11 75.5 481 25.2
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.9e-11 74.7 423 25.1
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 1.9e-11 74.7 448 25.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.5e-11 74.3 463 25.3
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 5.5e-11 73.2 392 27.0
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 5.5e-11 73.2 127 38.6
ATR0757G071 Amborella trichopoda HOM05D003485 ORTHO05D004004 7.2e-11 72.8 383 27.2
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 9.4e-11 72.4 469 23.5
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.2e-10 72.0 475 25.7
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.2e-10 72.0 463 24.4
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 3.6e-10 70.5 485 22.1
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 3.6e-10 70.5 510 24.9
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.6e-10 70.1 494 24.1
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.4e-09 68.6 416 25.0
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.4e-09 68.6 200 32.0
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.4e-09 68.6 351 28.2
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 2.3e-09 67.8 445 26.1
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.0e-09 67.4 449 26.5
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 6.7e-09 66.2 464 22.6
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 8.8e-09 65.9 455 24.6
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.1e-08 65.5 487 26.1
AUR62033369 Chenopodium quinoa HOM05D049868 ORTHO05D003225 1.5e-08 65.1 259 31.3
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 2.5e-08 64.3 216 27.3
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.7e-08 63.2 459 24.6
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 5.7e-08 63.2 475 24.6
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 9.7e-08 62.4 455 21.3
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 9.7e-08 62.4 455 24.2
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.7e-08 62.4 483 24.0
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.3e-07 62.0 457 23.6
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.2e-07 61.2 462 25.8
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.2e-07 61.2 462 25.8
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 3.7e-07 60.5 460 25.0
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.3e-07 59.7 435 23.7
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.3e-07 59.7 435 23.7
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 8.2e-07 59.3 462 23.4
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.4e-06 58.5 449 23.2
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 2.4e-06 57.8 177 30.5
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 2.4e-06 57.8 459 23.5
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.1e-06 57.0 428 25.9


User provided reference genes

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