Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G014100 Glycine max HOM05D001826 ORTHO05D214835 1.2e-30 136.0 71 100.0
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 8.1e-08 60.1 41 78.0
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 8.1e-08 60.1 41 78.0
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 8.1e-08 60.1 41 78.0
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 8.1e-08 60.1 41 78.0
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 1.1e-07 59.7 41 75.6
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 1.1e-07 59.7 41 75.6
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 1.1e-07 59.7 41 75.6
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 1.4e-07 59.3 41 73.2
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 1.4e-07 59.3 41 75.6
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 2.4e-07 58.5 41 73.2
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 2.4e-07 58.5 41 73.2
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 4.0e-07 57.8 46 63.0
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 6.8e-07 57.0 41 70.7
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 6.8e-07 57.0 41 70.7
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 68.3
RhsimUnG0002100 Rhododendron simsii HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 8.9e-07 56.6 41 73.2
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 1.2e-06 56.2 41 65.9
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 1.5e-06 55.8 41 70.7
FAN19G2020 Fragaria x ananassa HOM05D001826 ORTHO05D015538 1.5e-06 55.8 42 66.7
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 1.5e-06 55.8 41 70.7
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 2.0e-06 55.5 41 70.7
FAN23G1095 Fragaria x ananassa HOM05D000226 ORTHO05D000142 2.6e-06 55.1 42 66.7
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 2.6e-06 55.1 41 70.7
TAR374G0002 Trochodendron aralioides HOM05D001826 ORTHO05D004184 2.6e-06 55.1 41 68.3
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 70.7
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 70.7
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 70.7
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 68.3
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 68.3
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 68.3
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 68.3
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 70.7
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 3.4e-06 54.7 41 70.7
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 65.9
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
CARHR248780 Cardamine hirsuta HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 65.9
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 65.9
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 4.4e-06 54.3 41 68.3
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 65.9
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 63.4
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 68.3
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 65.9
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 63.4
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 70.7
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 68.3
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 68.3
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 63.4
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 68.3
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 68.3
VMungo1383G3314 Vigna mungo HOM05D001826 ORTHO05D004184 5.8e-06 53.9 41 63.4
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 68.3
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 68.3
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 68.3
CDE06G1001 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 65.9
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 65.9
Nn1g01433 Nelumbo nucifera HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 68.3
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 65.9
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 7.6e-06 53.5 41 68.3
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 9.9e-06 53.1 41 65.9
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 9.9e-06 53.1 41 65.9
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 9.9e-06 53.1 41 65.9
FvH4_1g27662 Fragaria vesca HOM05D001826 ORTHO05D015538 9.9e-06 53.1 57 54.4


User provided reference genes

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