Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G006100 Glycine max HOM05D000273 ORTHO05D010782 2.7e-32 141.4 69 100.0
Glyma.19G120000 Glycine max HOM05D000273 ORTHO05D000198 2.9e-18 94.7 49 91.8
Lalb_Chr22g0358401 Lupinus albus HOM05D000273 ORTHO05D000198 9.9e-11 69.7 46 73.9
VMungo1383G1259 Vigna mungo HOM05D000273 ORTHO05D000198 1.3e-10 69.3 56 64.3
Phvul.001G107900 Phaseolus vulgaris HOM05D000273 ORTHO05D000198 7.1e-09 63.5 56 57.1
TPR.G7820 Trifolium pratense HOM05D000273 ORTHO05D000198 7.1e-09 63.5 47 63.8
Medtr7g087190 Medicago truncatula HOM05D000273 ORTHO05D000198 1.6e-08 62.4 61 55.7
Psat3g085160 Pisum sativum HOM05D000273 ORTHO05D000198 2.7e-08 61.6 53 66.0
QL09p034596 Quercus lobata HOM05D000273 ORTHO05D010782 6.0e-08 60.5 50 58.0
BcaB08g36984 Brassica carinata HOM05D000273 ORTHO05D000198 1.0e-07 59.7 44 56.8
BcaB08g36999 Brassica carinata HOM05D000273 ORTHO05D000198 1.0e-07 59.7 44 56.8
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 1.3e-07 59.3 41 70.7
BraA10t44474Z Brassica rapa HOM05D000273 ORTHO05D000198 1.8e-07 58.9 51 51.0
Sed0001812 Sechium edule HOM05D000273 ORTHO05D000198 1.8e-07 58.9 47 63.8
AT5G14450 Arabidopsis thaliana HOM05D000273 ORTHO05D000198 2.3e-07 58.5 51 52.9
Ca_03439_v3 Cicer arietinum L. HOM05D000273 ORTHO05D000198 2.3e-07 58.5 53 69.8
Migut.E00211 Erythranthe guttata HOM05D000273 ORTHO05D000198 2.3e-07 58.5 40 67.5
Lj1g0019953 Lotus japonicus HOM05D000273 ORTHO05D000198 2.3e-07 58.5 57 63.2
QL09p034657 Quercus lobata HOM05D000273 ORTHO05D010782 2.3e-07 58.5 38 73.7
SalBow8G3584 Salvia bowleyana HOM05D000273 ORTHO05D000198 2.3e-07 58.5 34 76.5
ATR0824G227 Amborella trichopoda HOM05D000273 ORTHO05D000198 3.9e-07 57.8 41 63.4
Sp6g29570 Schrenkiella parvula HOM05D000273 ORTHO05D000198 5.1e-07 57.4 51 51.0
Carub.0002s1429 Capsella rubella HOM05D000273 ORTHO05D000198 6.7e-07 57.0 47 66.0
Thhalv10013537m.g Eutrema salsugineum HOM05D000273 ORTHO05D000198 6.7e-07 57.0 45 55.6
MD16G1100200 Malus domestica HOM05D000273 ORTHO05D000198 6.7e-07 57.0 52 57.7
SHI51653 Sapria himalayana HOM05D000273 ORTHO05D000198 6.7e-07 57.0 40 67.5
Aqoxy5G03729 Aquilegia oxysepala HOM05D000273 ORTHO05D000198 8.7e-07 56.6 48 56.2
AL2G26580 Arabidopsis lyrata HOM05D000273 ORTHO05D000198 8.7e-07 56.6 45 62.2
Carub.0005s0440 Capsella rubella HOM05D000273 ORTHO05D000198 8.7e-07 56.6 51 64.7
FAN24G1186 Fragaria x ananassa HOM05D000273 ORTHO05D000198 8.7e-07 56.6 46 65.2
Manes.02G163200 Manihot esculenta HOM05D000273 ORTHO05D000198 8.7e-07 56.6 40 70.0
TPR.G35786 Trifolium pratense HOM05D000273 ORTHO05D000198 8.7e-07 56.6 42 59.5
Atru.chr11.2157 Acer truncatum HOM05D000273 ORTHO05D000198 1.1e-06 56.2 43 55.8
Cfa016016 Carpinus fangiana HOM05D000273 ORTHO05D000198 1.1e-06 56.2 58 50.0
CiPaw.05G222000 Carya illinoinensis HOM05D000273 ORTHO05D000198 1.1e-06 56.2 52 57.7
Psat7g059400 Pisum sativum HOM05D000273 ORTHO05D000198 1.1e-06 56.2 44 56.8
TAR628G0630 Trochodendron aralioides HOM05D000273 ORTHO05D000198 1.1e-06 56.2 46 58.7
arahy.Tifrunner.gnm1.ann1.MI9HWR Arachis hypogaea HOM05D000273 ORTHO05D000198 1.5e-06 55.8 50 62.0
Dinv27314 Davidia involucrata HOM05D000273 ORTHO05D000198 1.5e-06 55.8 41 61.0
Migut.K01414 Erythranthe guttata HOM05D000273 ORTHO05D000198 1.5e-06 55.8 55 56.4
Hma1.2p1_0079F.1_g041060 Hydrangea macrophylla HOM05D000273 ORTHO05D000198 1.5e-06 55.8 48 60.4
Potri.008G185500 Populus trichocarpa HOM05D000273 ORTHO05D000198 1.5e-06 55.8 57 54.4
Solyc05g013690.4 Solanum lycopersicum HOM05D000273 ORTHO05D000198 1.5e-06 55.8 52 53.8
arahy.Tifrunner.gnm1.ann1.6F9B47 Arachis hypogaea HOM05D000273 ORTHO05D000198 1.9e-06 55.5 50 62.0
CARHR198860 Cardamine hirsuta HOM05D000273 ORTHO05D000198 1.9e-06 55.5 52 51.9
DCAR_012577 Daucus carota HOM05D000273 ORTHO05D000198 1.9e-06 55.5 50 50.0
Oeu059771.1 Olea europaea HOM05D000273 ORTHO05D000198 1.9e-06 55.5 52 57.7
Oeu059772.1 Olea europaea HOM05D000273 ORTHO05D000198 1.9e-06 55.5 52 57.7
SHI51807 Sapria himalayana HOM05D000273 ORTHO05D000198 1.9e-06 55.5 38 68.4
THA.LOC104825554 Tarenaya hassleriana HOM05D000273 ORTHO05D000198 1.9e-06 55.5 51 58.8
TPR.G6242 Trifolium pratense HOM05D000273 ORTHO05D000198 1.9e-06 55.5 45 62.2
CiPaw.05G221700 Carya illinoinensis HOM05D000273 ORTHO05D000198 2.5e-06 55.1 44 63.6
Ciclev10001435m.g Citrus clementina HOM05D000273 ORTHO05D000198 2.5e-06 55.1 35 71.4
CsaV3_3G042910 Cucumis sativus L. HOM05D000273 ORTHO05D000198 2.5e-06 55.1 53 58.5
FvH4_4g26011 Fragaria vesca HOM05D000273 ORTHO05D000198 2.5e-06 55.1 55 54.5
FAN17G0504 Fragaria x ananassa HOM05D000273 ORTHO05D000198 2.5e-06 55.1 55 54.5
Lsat_1_v5_gn_3_56980 Lactuca sativa HOM05D000273 ORTHO05D000198 2.5e-06 55.1 40 65.0
Lj1g0018080 Lotus japonicus HOM05D001032 ORTHO05D010782 2.5e-06 55.1 41 63.4
Manes.02G163300 Manihot esculenta HOM05D000273 ORTHO05D000198 2.5e-06 55.1 51 62.7
QL03p057564 Quercus lobata HOM05D000273 ORTHO05D000198 2.5e-06 55.1 33 75.8
Rhsim12G0109000 Rhododendron simsii HOM05D000273 ORTHO05D000198 2.5e-06 55.1 34 70.6
RcHm_v2.0_Chr4g0433451 Rosa chinensis HOM05D000273 ORTHO05D000198 2.5e-06 55.1 55 52.7
Sabra08G0140700 Salix brachista HOM05D000273 ORTHO05D000198 2.5e-06 55.1 60 55.0
A02p14530 Brassica napus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 52 55.8
A06p42000 Brassica napus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 51 60.8
C02p23570 Brassica napus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 52 57.7
C07p35470 Brassica napus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 51 60.8
BolC2t08486H Brassica oleracea HOM05D000273 ORTHO05D000198 3.3e-06 54.7 52 57.7
BolC7t44071H Brassica oleracea HOM05D000273 ORTHO05D000198 3.3e-06 54.7 51 60.8
BraA02t06519Z Brassica rapa HOM05D000273 ORTHO05D000198 3.3e-06 54.7 52 55.8
BraA06t27118Z Brassica rapa HOM05D000273 ORTHO05D000198 3.3e-06 54.7 51 60.8
CiPaw.05G180000 Carya illinoinensis HOM05D000273 ORTHO05D000198 3.3e-06 54.7 26 92.3
ClCG10G013760 Citrullus lanatus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 34 70.6
Gohir.A03G133600 Gossypium hirsutum HOM05D000273 ORTHO05D000198 3.3e-06 54.7 46 56.5
Lalb_Chr10g0101681 Lupinus albus HOM05D000273 ORTHO05D000198 3.3e-06 54.7 62 48.4
Sopen05g008600 Solanum pennellii HOM05D000273 ORTHO05D000198 3.3e-06 54.7 52 51.9
TWI32G0347 Tripterygium wilfordii HOM05D000273 ORTHO05D000198 3.3e-06 54.7 53 54.7
TAR622G0844 Trochodendron aralioides HOM05D000273 ORTHO05D000198 3.3e-06 54.7 46 63.0
Aa31sc684G30 Aethionema arabicum HOM05D000273 ORTHO05D000198 4.3e-06 54.3 48 60.4
AL5G15200 Arabidopsis lyrata HOM05D000273 ORTHO05D000198 4.3e-06 54.3 51 64.7
AT3G26430 Arabidopsis thaliana HOM05D000273 ORTHO05D000198 4.3e-06 54.3 45 66.7
Ciclev10031753m.g Citrus clementina HOM05D000273 ORTHO05D000198 4.3e-06 54.3 25 96.0
MELO3C026591.2 Cucumis melo HOM05D000273 ORTHO05D000198 4.3e-06 54.3 30 76.7
SalBow8G5202 Salvia bowleyana HOM05D000273 ORTHO05D000198 4.3e-06 54.3 25 96.0
Hund06036 Selenicereus undatus HOM05D000273 ORTHO05D000198 4.3e-06 54.3 42 64.3
Thecc.02G262400 Theobroma cacao HOM05D000273 ORTHO05D000198 4.3e-06 54.3 46 65.2
TAR628G0782 Trochodendron aralioides HOM05D000273 ORTHO05D000198 4.3e-06 54.3 46 58.7
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 5.6e-06 53.9 40 60.0
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 5.6e-06 53.9 39 64.1
CiPaw.05G179400 Carya illinoinensis HOM05D000273 ORTHO05D000198 5.6e-06 53.9 38 71.1
FvH4_2g26950 Fragaria vesca HOM05D000273 ORTHO05D000198 5.6e-06 53.9 50 58.0
FAN24G3003 Fragaria x ananassa HOM05D000273 ORTHO05D000198 5.6e-06 53.9 50 58.0
Gohir.D01G151700 Gossypium hirsutum HOM05D000273 ORTHO05D000198 5.6e-06 53.9 39 66.7
Gorai.002G188000 Gossypium raimondii HOM05D000273 ORTHO05D000198 5.6e-06 53.9 39 66.7
Hma1.2p1_0186F.1_g081810 Hydrangea macrophylla HOM05D000273 ORTHO05D000198 5.6e-06 53.9 55 50.9
Lj3g0009431 Lotus japonicus HOM05D000273 ORTHO05D000198 5.6e-06 53.9 44 61.4
Lalb_Chr10g0101701 Lupinus albus HOM05D000273 ORTHO05D000198 5.6e-06 53.9 44 61.4
Medtr1g030262 Medicago truncatula HOM05D000273 ORTHO05D010782 5.6e-06 53.9 50 58.0
Nitab4.5_0002653g0020 Nicotiana tabacum HOM05D000273 ORTHO05D000198 5.6e-06 53.9 49 61.2
PGSC0003DMG401018597 Solanum tuberosum HOM05D000273 ORTHO05D000198 5.6e-06 53.9 53 52.8
unitig_747.g21139 Utricularia gibba HOM05D000273 ORTHO05D000198 5.6e-06 53.9 45 64.4
BcaB05g24319 Brassica carinata HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
BcaC08g46209 Brassica carinata HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
A07p34410 Brassica napus HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
C06p42090 Brassica napus HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
BolC6t39209H Brassica oleracea HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
BolC6t39215H Brassica oleracea HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
BraA07t31069Z Brassica rapa HOM05D000273 ORTHO05D000198 7.4e-06 53.5 38 65.8
COL.COLO4_23468 Corchorus olitorius HOM05D000273 ORTHO05D000198 7.4e-06 53.5 48 58.3
DCAR_007046 Daucus carota HOM05D000273 ORTHO05D000198 7.4e-06 53.5 33 72.7
Thhalv10018726m.g Eutrema salsugineum HOM05D000273 ORTHO05D000198 7.4e-06 53.5 33 78.8
Lsat_1_v5_gn_8_152601 Lactuca sativa HOM05D000273 ORTHO05D000198 7.4e-06 53.5 40 62.5
Lalb_Chr14g0362891 Lupinus albus HOM05D000273 ORTHO05D000198 7.4e-06 53.5 56 50.0
MD11G1248900 Malus domestica HOM05D000273 ORTHO05D000198 7.4e-06 53.5 44 61.4
Manes.12G021600 Manihot esculenta HOM05D000273 ORTHO05D000198 7.4e-06 53.5 52 57.7
Medtr1g030340 Medicago truncatula HOM05D000273 ORTHO05D000198 7.4e-06 53.5 44 56.8
PSO782G2521 Papaver somniferum HOM05D000273 ORTHO05D000198 7.4e-06 53.5 37 67.6
Sp2g15580 Schrenkiella parvula HOM05D000273 ORTHO05D000198 7.4e-06 53.5 51 58.8
TPR.G25806 Trifolium pratense HOM05D000273 ORTHO05D000198 7.4e-06 53.5 55 52.7
CANSAT01G2224 Cannabis sativa HOM05D000273 ORTHO05D000198 9.6e-06 53.1 34 73.5
CiPaw.10G124900 Carya illinoinensis HOM05D000273 ORTHO05D000198 9.6e-06 53.1 45 57.8
ECA233G2557 Erigeron canadensis HOM05D000273 ORTHO05D000198 9.6e-06 53.1 40 60.0
FAN12G0361 Fragaria x ananassa HOM05D000273 ORTHO05D000198 9.6e-06 53.1 44 61.4
FAN12G2002 Fragaria x ananassa HOM05D000273 ORTHO05D000198 9.6e-06 53.1 44 61.4
FAN17G1970 Fragaria x ananassa HOM05D000022 ORTHO05D000744 9.6e-06 53.1 44 61.4
Gohir.D03G057950 Gossypium hirsutum HOM05D000273 ORTHO05D000198 9.6e-06 53.1 27 88.9
Lalb_Chr13g0295861 Lupinus albus HOM05D000273 ORTHO05D000198 9.6e-06 53.1 53 52.8
Manes.18G077012 Manihot esculenta HOM05D000273 ORTHO05D000198 9.6e-06 53.1 41 58.5
Medtr7g033165 Medicago truncatula HOM05D000273 ORTHO05D000198 9.6e-06 53.1 37 67.6
PSO170G4875 Papaver somniferum HOM05D000273 ORTHO05D000198 9.6e-06 53.1 25 88.0
Sp5g22840 Schrenkiella parvula HOM05D000273 ORTHO05D000198 9.6e-06 53.1 34 70.6
GSVIVG01000545001 Vitis vinifera HOM05D000273 ORTHO05D000198 9.6e-06 53.1 46 56.5
GSVIVG01000546001 Vitis vinifera HOM05D000273 ORTHO05D000198 9.6e-06 53.1 47 59.6


User provided reference genes

Program Settings