Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 2.2e-185 652.1 331 100.0
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 2.9e-164 582.0 341 89.4
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 1.4e-150 536.6 340 82.1
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 3.7e-148 528.5 340 82.6
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 9.3e-123 444.1 354 70.6
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 1.0e-121 440.7 354 70.6
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 2.8e-119 432.6 349 70.5
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 4.6e-114 415.2 360 68.1
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 1.3e-111 407.1 348 66.1
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 6.0e-106 388.3 353 63.5
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 1.1e-99 367.5 325 64.6
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 1.4e-78 297.4 360 50.8
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 1.8e-73 280.4 351 50.4
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 1.1e-72 277.7 368 48.4
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 2.2e-71 273.5 368 50.0
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 3.5e-69 266.2 244 67.6
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 2.1e-66 256.9 370 45.9
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.2e-63 246.9 276 54.0
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.2e-60 236.9 398 42.5
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 2.7e-58 229.9 371 45.3
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 2.7e-58 229.9 377 45.4
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.8e-57 227.3 373 45.8
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 2.3e-57 226.9 371 44.7
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 7.5e-56 221.9 402 44.0
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 8.3e-55 218.4 370 43.8
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 7.0e-54 215.3 370 45.9
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 7.3e-51 205.3 307 47.2
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.0e-49 201.4 415 40.0
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 4.0e-49 199.5 399 39.1
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 3.4e-48 196.4 368 40.5
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 3.7e-47 193.0 366 41.3
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 4.9e-47 192.6 258 49.2
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.8e-46 190.7 358 39.4
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 2.4e-46 190.3 346 39.6
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.0e-44 184.9 382 40.6
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 1.7e-44 184.1 386 39.6
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 3.9e-44 183.0 417 36.2
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 8.6e-44 181.8 337 40.7
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 1.6e-42 177.6 273 43.6
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 6.2e-42 175.6 179 62.0
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 1.0e-41 174.9 401 35.2
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 1.0e-41 174.9 478 33.5
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 8.9e-41 171.8 417 35.3
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 1.2e-40 171.4 360 37.2
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.5e-40 171.0 381 37.8
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 2.0e-40 170.6 415 35.9
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 5.8e-40 169.1 414 36.7
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 4.9e-39 166.0 336 39.9
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 5.4e-38 162.5 179 60.9
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 3.5e-37 159.8 351 36.5
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 4.6e-37 159.5 101 73.3
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 6.0e-37 159.1 380 36.1
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 1.3e-36 157.9 248 49.2
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 3.0e-36 156.8 398 34.4
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 1.1e-35 154.8 338 38.2
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 3.3e-35 153.3 413 36.8
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 5.6e-35 152.5 490 30.8
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 1.8e-33 147.5 292 42.8
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 3.7e-31 139.8 211 42.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.3e-31 138.7 300 40.3
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 7.8e-29 132.1 260 39.2
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.1e-27 128.3 469 28.4
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 1.5e-27 127.9 453 30.0
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 4.3e-27 126.3 458 29.5
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 4.3e-27 126.3 370 34.9
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 9.5e-27 125.2 354 33.6
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 4.7e-26 122.9 148 55.4
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 8.1e-26 122.1 403 31.3
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 1.8e-25 120.9 382 33.5
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 3.1e-25 120.2 383 33.4
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 1.5e-24 117.9 325 34.5
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 9.9e-24 115.2 391 32.0
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.3e-23 114.8 150 53.3
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 5.4e-22 109.4 263 38.0
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 4.6e-21 106.3 319 31.0
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 1.6e-18 97.8 342 28.1
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 2.1e-18 97.4 101 62.4
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 2.8e-18 97.1 320 28.4
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 4.7e-18 96.3 159 44.0
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 8.1e-18 95.5 349 29.5
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 8.1e-18 95.5 99 59.6
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 1.4e-17 94.7 361 29.1
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 3.1e-17 93.6 446 27.1
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 6.9e-17 92.4 101 59.4
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 2.2e-15 87.4 334 28.7
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 3.8e-15 86.7 99 57.6
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 1.1e-14 85.1 167 40.1
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 7.1e-14 82.4 224 29.0
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 7.1e-14 82.4 224 29.0
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 1.2e-13 81.6 366 27.9
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 1.2e-13 81.6 366 27.9
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 3.5e-13 80.1 115 46.1
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 4.6e-13 79.7 240 30.0
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 1.7e-12 77.8 162 33.3
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 3.0e-12 77.0 236 28.8
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 3.0e-12 77.0 331 27.5
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 5.1e-12 76.3 375 28.0
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 5.1e-12 76.3 378 24.6
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 6.6e-12 75.9 334 25.1
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 6.6e-12 75.9 334 25.1
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 8.7e-12 75.5 369 27.1
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 1.1e-11 75.1 369 27.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-11 75.1 87 59.8
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 1.5e-11 74.7 174 36.2
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 1.9e-11 74.3 334 24.9
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 1.9e-11 74.3 242 29.8
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 3.3e-11 73.6 215 31.6
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 4.3e-11 73.2 375 24.5
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 5.6e-11 72.8 375 27.2
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 5.6e-11 72.8 240 27.5
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 9.6e-11 72.0 66 57.6
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 2.8e-10 70.5 369 26.6
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 3.6e-10 70.1 72 50.0
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.4e-09 67.4 69 58.0
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 5.3e-09 66.2 374 25.9
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 9.0e-09 65.5 238 25.2
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 9.0e-09 65.5 89 39.3
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 1.2e-08 65.1 154 38.3
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 3.4e-08 63.5 380 25.3
FvH4_1g29470 Fragaria vesca HOM05D007667 ORTHO05D008033 1.7e-07 61.2 85 49.4
MBI13_g08647_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.4e-06 57.4 108 39.8
Os03g0319200 Oryza sativa ssp. japonica HOM05D043175 ORTHO05D008033 2.4e-06 57.4 264 27.7


User provided reference genes

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