Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.6e-253 878.2 439 100.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 3.5e-242 841.3 439 96.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.0e-225 786.6 438 89.0
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.3e-225 786.2 438 89.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.9e-217 758.4 439 85.6
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 8.9e-214 746.9 439 84.3
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 8.3e-212 740.3 439 83.8
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.7e-202 708.8 440 81.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.6e-199 699.5 440 80.2
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.0e-193 680.2 437 74.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.5e-192 675.6 437 74.6
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.1e-190 670.2 437 74.4
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.1e-190 670.2 437 74.1
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.0e-190 668.3 437 73.9
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.2e-189 666.8 436 74.3
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.8e-189 664.5 437 73.2
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.3e-188 663.3 437 73.5
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 4.9e-188 661.4 437 73.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 4.9e-188 661.4 437 72.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.9e-187 659.4 438 73.5
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 3.2e-187 658.7 437 71.4
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.2e-187 658.3 437 72.1
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 5.4e-187 657.9 438 74.2
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.6e-186 656.4 433 74.6
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.1e-186 656.0 433 73.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.7e-186 655.6 437 72.1
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 2.7e-186 655.6 435 73.3
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 6.0e-186 654.4 433 74.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.0e-185 653.7 437 72.5
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 3.0e-185 652.1 437 72.3
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.9e-185 651.7 433 73.7
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.5e-184 649.0 437 73.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.1e-183 646.0 435 71.5
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.8e-182 642.9 437 70.9
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.8e-182 642.9 437 72.8
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 3.1e-182 642.1 437 70.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 2.0e-181 639.4 433 70.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.0e-181 639.4 437 70.3
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.4e-181 638.6 436 70.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.9e-180 635.6 436 71.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 3.8e-180 635.2 436 71.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.4e-180 634.0 437 70.3
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.9e-179 632.9 433 70.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 9.3e-179 630.6 730 50.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.0e-177 627.1 438 68.5
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.3e-177 625.9 436 70.6
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 3.0e-177 625.5 436 68.8
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 3.3e-176 622.1 433 70.2
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.3e-176 621.7 436 68.8
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 7.3e-176 620.9 437 69.3
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 7.3e-176 620.9 475 64.8
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 9.6e-176 620.5 436 69.0
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.3e-175 620.2 431 71.2
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 4.8e-175 618.2 380 82.9
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.1e-175 617.5 433 68.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.4e-174 616.7 433 70.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.8e-174 616.3 440 67.3
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.4e-174 615.9 436 67.7
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.0e-174 615.1 433 69.3
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 4.0e-174 615.1 433 70.2
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 5.3e-174 614.8 463 66.7
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 6.9e-174 614.4 438 67.6
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.5e-173 611.7 439 68.6
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 4.5e-173 611.7 435 68.3
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 6.4e-172 607.8 427 67.9
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 8.4e-172 607.4 433 69.5
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 7.1e-171 604.4 420 71.0
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.1e-171 604.4 435 66.9
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 7.1e-171 604.4 447 68.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.7e-170 602.4 438 68.7
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.0e-170 601.3 433 68.4
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.0e-169 599.0 435 69.4
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 3.3e-168 595.5 366 82.8
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 5.3e-166 588.2 483 62.3
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 9.0e-166 587.4 420 69.5
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 9.0e-166 587.4 517 59.4
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 9.0e-166 587.4 528 57.2
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.2e-165 587.0 441 66.9
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.4e-165 585.5 475 62.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.8e-164 582.0 434 64.3
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 6.4e-164 581.3 482 62.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.4e-164 581.3 438 63.7
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.6e-162 576.6 434 65.7
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.0e-161 573.9 437 64.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 2.5e-160 569.3 436 65.8
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.3e-160 568.9 437 65.9
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.6e-160 568.2 437 65.4
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 7.4e-160 567.8 432 66.4
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.2e-159 564.3 379 72.0
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.4e-157 558.9 425 65.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 8.4e-156 554.3 452 61.1
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.7e-153 544.3 366 73.2
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.5e-149 533.5 383 68.1
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.2e-147 525.8 437 61.1
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 2.1e-146 523.1 426 63.8
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.4e-144 514.6 383 65.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 6.3e-143 511.5 383 65.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.1e-142 510.8 454 59.3
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.6e-138 496.9 434 58.8
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.3e-132 477.2 442 54.3
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 5.0e-132 475.3 699 40.9
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 9.1e-126 454.5 304 73.0
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 5.0e-124 448.7 436 51.1
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.2e-120 437.6 342 65.8
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.7e-119 432.6 341 63.6
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.4e-118 430.6 435 49.4
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 9.1e-118 427.9 320 65.9
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.8e-113 411.4 299 68.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.5e-107 394.0 438 48.4
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 9.5e-99 364.8 350 51.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 9.8e-96 354.8 223 79.8
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.9e-87 326.6 259 65.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.0e-81 306.2 223 69.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.8e-74 283.5 237 64.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.3e-67 258.8 161 77.6
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 6.2e-66 255.8 283 51.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-65 254.6 215 63.7
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.5e-61 240.0 433 33.3
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.8e-58 230.3 135 77.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 9.9e-56 221.9 438 34.9
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.4e-54 218.0 159 67.3
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.3e-52 210.7 134 76.9
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.7e-47 194.5 139 66.9
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.6e-45 188.0 144 63.9
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.2e-38 163.7 322 32.6
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 7.4e-35 152.5 204 47.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 2.8e-34 150.6 197 48.2
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-33 148.7 153 47.7
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.4e-27 125.9 120 54.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 9.4e-22 109.0 149 46.3
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 5.1e-20 103.2 100 48.0
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.5e-19 101.7 79 58.2
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.8e-18 97.4 57 71.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.2e-15 87.8 71 56.3
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.1e-14 85.5 71 56.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.1e-13 81.3 71 53.5
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.0e-12 77.4 85 40.0
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.5e-11 75.1 49 65.3
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.7e-10 71.6 47 72.3
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.8e-09 68.2 53 66.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 5.3e-09 66.6 43 67.4
TPR.G29431 Trifolium pratense HOM05D033146 ORTHO05D019265 8.5e-07 59.3 44 72.7


User provided reference genes

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