Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 5.2e-37 157.1 76 100.0
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.3e-24 115.9 76 77.6
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.0e-24 114.8 76 76.3
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 3.9e-24 114.4 76 77.6
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 7.3e-23 110.2 76 69.7
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 1.2e-22 109.4 76 73.7
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.6e-22 109.0 76 72.4
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 6.2e-22 107.1 76 68.4
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 3.1e-21 104.8 76 67.1
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 3.1e-21 104.8 76 67.1
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 4.0e-21 104.4 74 70.3
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 6.8e-21 103.6 76 67.1
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.6e-20 101.7 76 65.8
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 3.4e-20 101.3 76 65.8
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 3.4e-20 101.3 76 63.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 7.5e-20 100.1 76 68.4
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.3e-19 99.4 76 67.1
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.7e-19 99.0 76 65.8
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 2.2e-19 98.6 76 64.5
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 2.9e-19 98.2 76 63.2
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 2.9e-19 98.2 66 71.2
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 3.7e-19 97.8 76 64.5
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 4.9e-19 97.4 76 64.5
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.9e-19 97.4 69 71.0
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 6.4e-19 97.1 76 64.5
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.4e-18 95.9 76 63.2
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 1.4e-18 95.9 76 63.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 1.4e-18 95.9 76 63.2
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.4e-18 95.9 76 63.2
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.9e-18 95.5 76 63.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.9e-18 95.5 76 63.2
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.9e-18 95.5 74 66.2
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 2.4e-18 95.1 76 63.2
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.4e-18 95.1 76 65.8
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 3.2e-18 94.7 76 63.2
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.2e-18 94.7 76 64.5
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 3.2e-18 94.7 80 61.2
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 3.2e-18 94.7 66 68.2
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 9.2e-18 93.2 76 61.8
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 9.2e-18 93.2 76 68.4
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.2e-17 92.8 76 60.5
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.2e-17 92.8 73 63.0
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.2e-17 92.8 69 68.1
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 4.6e-17 90.9 76 59.2
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 6.0e-17 90.5 69 66.7
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 6.0e-17 90.5 76 65.8
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 7.8e-17 90.1 76 65.8
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.0e-16 89.7 78 61.5
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.3e-16 89.4 76 57.9
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.3e-16 89.4 49 79.6
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.7e-16 89.0 75 62.7
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 2.3e-16 88.6 76 57.9
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 3.0e-16 88.2 46 84.8
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 3.0e-16 88.2 76 59.2
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.9e-16 87.8 73 60.3
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.5e-15 85.9 65 63.1
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.9e-15 85.5 75 57.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.9e-15 85.5 76 59.2
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.9e-15 85.5 76 59.2
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 5.6e-15 84.0 78 55.1
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 5.6e-15 84.0 76 57.9
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 9.5e-15 83.2 65 61.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 1.2e-14 82.8 76 59.2
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 6.2e-14 80.5 81 53.1
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 6.2e-14 80.5 72 55.6
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 6.2e-14 80.5 49 79.6
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 1.1e-13 79.7 76 56.6
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.1e-13 79.7 75 53.3
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.1e-13 79.7 75 53.3
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.1e-13 79.7 74 54.1
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 5.2e-13 77.4 53 64.2
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 8.9e-13 76.6 75 52.0
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.4e-12 74.3 77 54.5
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.3e-11 72.8 78 52.6
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.9e-11 71.6 64 50.0
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 1.9e-10 68.9 49 67.3
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.4e-10 68.6 77 51.9
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 4.1e-10 67.8 72 51.4
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 7.1e-10 67.0 78 50.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 3.5e-09 64.7 68 50.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.6e-09 64.3 40 60.0
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 2.1e-06 55.5 54 53.7
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 2.1e-06 55.5 50 56.0
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 2.8e-06 55.1 64 51.6
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 3.6e-06 54.7 50 54.0
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 4.7e-06 54.3 49 53.1
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 6.2e-06 53.9 50 54.0
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 8.1e-06 53.5 93 44.1


User provided reference genes

Program Settings