Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 9.7e-89 330.1 164 100.0
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 2.5e-76 288.9 164 87.8
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 8.0e-75 283.9 164 84.8
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 2.8e-72 275.4 165 83.0
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 1.0e-69 266.9 164 81.7
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 3.8e-69 265.0 164 78.7
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 2.8e-64 248.8 143 87.4
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 3.6e-59 231.9 150 78.0
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 1.0e-58 230.3 159 73.6
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 1.8e-58 229.6 162 71.6
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 4.4e-57 224.9 162 67.3
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 5.7e-57 224.6 158 70.3
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 1.7e-56 223.0 165 69.1
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.7e-56 223.0 158 69.6
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 3.7e-56 221.9 169 67.5
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 6.3e-56 221.1 163 66.9
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 1.4e-55 219.9 162 67.3
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 3.1e-55 218.8 160 66.9
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 4.1e-55 218.4 161 68.3
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 7.0e-55 217.6 150 72.0
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 7.0e-55 217.6 165 66.7
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 9.1e-55 217.2 161 68.3
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 2.7e-54 215.7 145 73.1
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 4.5e-54 214.9 163 63.2
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 7.7e-54 214.2 161 68.3
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 1.7e-53 213.0 157 66.2
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 1.7e-53 213.0 161 65.2
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 2.9e-53 212.2 161 67.1
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 2.9e-53 212.2 164 64.6
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 2.5e-52 209.1 165 66.1
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 3.3e-52 208.8 165 65.5
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 4.2e-52 208.4 165 66.1
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 4.2e-52 208.4 154 67.5
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 7.2e-52 207.6 168 62.5
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 1.2e-51 206.8 149 69.1
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 1.2e-51 206.8 164 65.2
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 3.6e-51 205.3 161 63.4
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 8.0e-51 204.1 167 62.3
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 8.0e-51 204.1 163 63.2
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-50 203.4 168 60.1
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-50 203.4 168 60.1
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-50 203.4 168 60.1
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 3.0e-50 202.2 148 68.2
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 6.8e-50 201.1 151 64.9
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 8.9e-50 200.7 148 67.6
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 1.2e-49 200.3 140 69.3
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 1.5e-49 199.9 150 67.3
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 1.5e-49 199.9 149 65.8
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 2.6e-49 199.1 158 63.3
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 1.7e-48 196.4 156 62.2
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 1.4e-47 193.4 162 60.5
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 1.8e-47 193.0 162 59.9
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 1.8e-47 193.0 232 47.4
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 1.8e-47 193.0 149 65.1
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 2.4e-47 192.6 148 60.8
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 7.0e-47 191.0 135 67.4
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 9.2e-47 190.7 140 67.1
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 1.6e-46 189.9 148 59.5
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 1.6e-46 189.9 148 59.5
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 2.0e-46 189.5 148 60.1
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 3.5e-46 188.7 150 60.7
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 8.6e-45 184.1 209 50.7
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 1.1e-44 183.7 156 55.1
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 1.1e-44 183.7 165 58.2
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.1e-44 183.7 146 58.9
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 1.9e-44 183.0 147 59.9
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 2.5e-44 182.6 146 63.0
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 3.3e-44 182.2 148 58.8
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 3.3e-44 182.2 147 62.6
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 2.3e-42 176.0 159 58.5
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 5.8e-41 171.4 142 55.6
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 7.5e-41 171.0 135 58.5
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 9.8e-41 170.6 135 58.5
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 1.3e-40 170.2 139 59.7
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 2.2e-40 169.5 146 56.8
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 2.9e-40 169.1 161 53.4
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 4.9e-40 168.3 151 55.6
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 6.4e-40 167.9 135 59.3
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 6.4e-40 167.9 142 54.9
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 3.2e-39 165.6 135 55.6
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 1.3e-37 160.2 126 58.7
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 1.1e-36 157.1 137 54.7
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 1.5e-36 156.8 160 54.4
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 4.3e-36 155.2 146 51.4
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 5.6e-36 154.8 153 54.2
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 1.4e-34 150.2 145 53.1
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 4.4e-33 145.2 147 51.7
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 1.7e-32 143.3 112 64.3
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 2.4e-31 139.4 132 51.5
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 2.7e-30 136.0 102 65.7
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 7.3e-28 127.9 87 73.6
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 1.2e-27 127.1 90 66.7
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.6e-27 126.7 92 70.7
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 2.8e-27 125.9 87 74.7
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 8.9e-26 120.9 79 77.2
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.2e-25 120.6 91 69.2
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 1.5e-25 120.2 85 70.6
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 1.7e-24 116.7 82 68.3
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 3.2e-23 112.5 118 52.5
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 1.2e-22 110.5 87 66.7
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 1.3e-21 107.1 140 41.4
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 1.3e-21 107.1 93 50.5
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 6.6e-21 104.8 144 40.3
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 1.5e-20 103.6 90 55.6
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 1.9e-20 103.2 135 43.7
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.6e-19 99.0 81 65.4
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 5.2e-18 95.1 74 58.1
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 1.3e-13 80.5 44 86.4
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 1.5e-09 67.0 43 69.8
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.9e-08 62.8 72 41.7
MCO11G099 Micromonas commoda HOM05D007186 ORTHO05D008970 8.4e-08 61.2 160 27.5
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 6.0e-06 55.1 42 69.0


User provided reference genes

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