Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.5e-267 925.6 475 100.0
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 9.7e-182 640.6 351 91.2
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.1e-180 637.1 465 70.5
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 4.5e-179 631.7 468 69.9
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 7.7e-179 630.9 475 71.8
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 9.7e-174 614.0 446 69.7
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.0e-171 606.3 469 68.0
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 3.8e-170 602.1 471 67.1
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 7.0e-164 581.3 450 66.2
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.5e-153 546.2 394 70.3
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 4.2e-153 545.4 451 64.7
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 4.7e-152 542.0 451 64.5
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 4.0e-119 432.6 454 52.4
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 8.4e-117 424.9 443 52.8
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.1e-115 420.2 443 52.6
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 4.6e-115 419.1 459 51.6
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 6.0e-115 418.7 432 51.9
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.0e-114 417.9 446 51.8
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.0e-114 417.9 441 54.2
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 2.3e-114 416.8 450 52.2
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 3.9e-114 416.0 447 52.6
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.1e-113 414.5 432 52.1
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.9e-113 413.7 444 50.7
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.3e-113 412.9 446 51.6
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.2e-112 411.0 437 50.8
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.1e-112 410.2 437 50.8
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 3.6e-112 409.5 446 51.1
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 8.1e-112 408.3 442 52.5
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.8e-111 407.1 429 52.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 4.0e-111 406.0 436 51.4
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-110 404.1 437 50.1
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 7.6e-110 401.7 435 51.3
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.3e-109 401.0 435 51.3
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 1.7e-109 400.6 437 51.9
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.9e-109 399.1 449 51.0
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.4e-108 397.5 424 50.5
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.6e-107 394.0 442 51.8
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.6e-107 394.0 448 50.2
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 3.5e-107 392.9 437 49.7
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 4.3e-105 386.0 442 48.4
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 5.6e-105 385.6 438 48.4
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 7.3e-105 385.2 433 49.0
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.1e-104 383.6 440 50.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.6e-104 382.9 438 48.9
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 3.6e-104 382.9 441 47.8
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 8.1e-104 381.7 441 47.2
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.3e-103 379.0 457 46.8
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 5.8e-102 375.6 430 47.2
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 7.6e-102 375.2 428 47.0
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 8.4e-101 371.7 442 48.6
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.1e-100 371.3 450 46.2
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 4.2e-100 369.4 438 48.6
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 5.4e-100 369.0 457 47.5
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.2e-99 367.9 441 47.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 2.1e-99 367.1 439 46.9
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 6.0e-99 365.5 430 45.6
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 7.9e-99 365.2 439 47.2
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 7.9e-99 365.2 448 46.4
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.8e-98 364.0 426 50.0
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 3.0e-98 363.2 388 51.0
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 3.9e-98 362.8 455 47.7
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 5.1e-98 362.5 438 46.6
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 5.1e-98 362.5 438 46.6
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.7e-98 362.1 383 51.7
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.9e-97 360.5 438 46.3
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.9e-97 360.5 383 50.7
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 5.6e-97 359.0 438 46.1
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 7.4e-97 358.6 438 46.1
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.3e-96 357.8 441 45.6
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.7e-96 356.3 436 47.5
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 8.1e-96 355.1 438 45.7
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 4.0e-95 352.8 418 48.3
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.4e-94 349.7 433 46.4
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.3e-93 347.8 458 46.1
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 2.9e-93 346.7 430 46.5
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.1e-92 344.7 385 48.1
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 7.1e-92 342.0 441 45.1
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 9.3e-92 341.7 422 46.2
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 6.0e-91 339.0 474 42.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.3e-90 337.8 388 46.4
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 5.1e-90 335.9 387 47.3
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 8.7e-90 335.1 426 43.9
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 8.7e-90 335.1 447 45.0
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.2e-88 328.9 457 44.0
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 1.8e-87 327.4 438 44.7
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 3.1e-87 326.6 433 45.5
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 5.3e-87 325.9 476 41.4
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.5e-86 324.3 459 42.3
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 2.0e-86 323.9 385 47.3
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 5.8e-86 322.4 433 45.0
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 4.9e-85 319.3 383 44.9
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 6.5e-85 318.9 436 44.0
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 8.4e-85 318.5 383 46.0
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.9e-84 317.4 446 43.0
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 7.1e-84 315.5 499 38.9
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 2.1e-83 313.9 303 57.1
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.1e-83 313.9 383 45.4
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 2.7e-83 313.5 385 45.2
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 3.9e-82 309.7 326 50.3
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 6.7e-82 308.9 388 43.8
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.9e-81 307.4 432 40.7
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 5.3e-79 299.3 409 42.3
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.2e-78 298.1 297 53.2
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.3e-77 294.7 383 42.8
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 2.7e-75 287.0 353 44.2
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.6e-75 286.2 397 41.8
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 2.3e-74 283.9 440 39.5
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.9e-73 280.8 434 40.3
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.3e-72 278.1 447 39.8
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 4.8e-72 276.2 425 38.8
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.8e-71 274.2 447 39.6
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 4.5e-70 269.6 435 40.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 9.7e-65 251.9 437 36.8
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.4e-63 248.1 457 35.0
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.5e-62 243.0 473 35.1
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.5e-60 237.3 449 35.4
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 2.3e-58 230.7 388 38.1
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.7e-57 225.3 422 37.4
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 5.0e-53 213.0 427 35.6
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.9e-52 211.1 426 33.3
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.5e-49 201.4 275 43.3
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.4e-47 194.9 372 33.1
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.1e-44 185.3 402 32.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 8.6e-37 159.1 294 37.1
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.1e-13 80.1 146 36.3
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.0e-10 70.5 94 43.6
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 6.8e-10 69.7 136 32.4
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.9e-08 64.3 57 64.9


User provided reference genes

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