Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 4.1e-113 411.4 205 100.0
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.6e-109 399.4 205 95.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 3.4e-107 391.7 205 93.7
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 5.4e-105 384.4 205 93.7
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 6.6e-103 377.5 205 89.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.2e-101 373.2 205 88.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.8e-100 369.4 205 86.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.8e-99 364.4 205 86.3
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.1e-97 360.1 206 85.4
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 5.4e-97 357.8 203 85.2
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 5.4e-97 357.8 203 85.2
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 9.2e-97 357.1 205 86.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 2.1e-96 355.9 205 84.4
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 7.3e-94 347.4 205 83.9
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.5e-86 322.4 205 74.6
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 8.1e-85 317.4 200 76.0
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 200 75.5
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 2.4e-84 315.8 200 75.0
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 3.1e-84 315.5 201 74.6
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 4.0e-84 315.1 205 75.1
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.0e-84 315.1 200 75.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 4.0e-84 315.1 205 74.1
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 5.3e-84 314.7 200 75.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.5e-83 313.2 199 74.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.0e-83 312.8 199 74.4
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.4e-83 312.0 200 76.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.4e-83 312.0 200 76.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 5.8e-83 311.2 197 73.6
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 5.8e-83 311.2 207 74.4
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 7.6e-83 310.8 207 74.4
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 7.6e-83 310.8 200 76.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 7.6e-83 310.8 205 72.7
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 73.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.2e-82 309.3 200 75.5
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.2e-82 309.3 201 74.1
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.9e-82 308.9 203 75.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 4.9e-82 308.1 207 72.9
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 4.9e-82 308.1 207 72.9
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.9e-82 308.1 200 75.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 4.9e-82 308.1 201 73.1
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 6.4e-82 307.8 207 72.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.4e-82 307.8 201 73.1
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 6.4e-82 307.8 200 73.5
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.1e-81 307.0 207 72.5
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.4e-81 306.6 206 72.3
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.9e-81 306.2 207 72.0
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 71.7
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.4e-81 305.8 207 72.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.2e-81 305.4 202 72.8
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.2e-81 305.4 207 74.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 74.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 5.4e-81 304.7 206 70.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 5.4e-81 304.7 206 70.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 5.4e-81 304.7 206 70.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 7.1e-81 304.3 201 72.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 9.3e-81 303.9 201 73.1
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 9.3e-81 303.9 206 73.3
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 9.3e-81 303.9 201 71.6
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 9.3e-81 303.9 201 72.6
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.2e-80 303.5 202 73.3
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.7e-80 302.4 201 73.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.5e-80 302.0 207 72.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 207 72.5
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 207 72.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.6e-80 301.6 207 72.5
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.0e-80 301.2 207 72.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.0e-79 300.4 197 73.1
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-79 300.1 207 72.0
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.3e-79 299.3 196 72.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.3e-79 299.3 199 71.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 3.0e-79 298.9 191 76.4
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.0e-79 298.9 200 75.0
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.0e-79 298.9 200 72.5
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-79 298.1 207 71.5
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.1e-79 298.1 203 70.9
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 6.7e-79 297.7 206 73.3
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.7e-79 297.7 206 70.4
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.7e-79 297.7 199 71.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.1e-78 297.0 222 67.6
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.1e-78 297.0 199 71.4
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.5e-78 296.6 199 72.4
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.5e-78 296.6 199 71.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.5e-78 296.6 199 70.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.9e-78 296.2 207 70.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.9e-78 296.2 199 71.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 4.3e-78 295.0 217 67.7
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 5.6e-78 294.7 206 69.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.3e-77 293.5 206 71.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.6e-77 293.1 199 70.4
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.8e-77 292.4 199 70.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.8e-77 291.6 198 72.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 8.1e-77 290.8 199 72.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.4e-76 289.3 200 69.5
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 5.3e-76 288.1 206 69.9
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 6.9e-76 287.7 199 70.9
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 9.0e-76 287.3 200 73.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.2e-75 287.0 189 72.0
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.5e-75 285.0 259 60.6
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.3e-74 283.5 199 71.4
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.2e-74 282.7 200 68.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.9e-74 282.3 200 69.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 6.4e-74 281.2 198 70.2
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.2e-73 278.9 208 69.2
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 3.2e-73 278.9 198 69.7
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 5.5e-73 278.1 200 67.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 7.1e-73 277.7 200 67.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.2e-72 276.9 200 67.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.5e-72 275.4 205 63.9
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.1e-70 270.4 201 64.7
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.3e-70 268.5 201 66.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 7.4e-70 267.7 201 64.2
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.8e-69 265.8 203 62.6
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.1e-68 263.8 200 65.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.3e-68 261.5 201 66.7
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 4.5e-67 258.5 203 59.6
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.9e-66 255.8 191 64.9
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.9e-65 253.1 202 58.4
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 5.1e-63 245.0 202 60.9
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 5.1e-63 245.0 206 57.3
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-53 213.8 135 77.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.3e-53 213.8 212 50.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.8e-52 209.9 209 51.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-52 209.1 142 70.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.6e-51 206.1 203 53.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 8.5e-50 201.1 139 70.5
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 8.5e-50 201.1 200 55.0
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.5e-50 201.1 141 71.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.4e-49 197.6 141 73.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.9e-47 192.2 144 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 6.3e-45 184.9 206 46.1
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.5e-42 174.9 129 63.6
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.1e-40 169.9 166 55.4
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.9e-34 149.4 174 48.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 9.1e-28 127.9 195 40.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.2e-26 123.2 195 35.9
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.5e-25 119.8 69 84.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.6e-24 117.1 99 59.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 4.7e-24 115.5 125 47.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 8.0e-24 114.8 202 35.6
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.2e-22 110.9 77 63.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.6e-22 109.8 137 47.4
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.8e-21 105.5 66 71.2
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.1e-16 88.6 65 70.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-15 87.0 65 64.6
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.7e-14 82.0 51 74.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.3e-13 80.9 72 62.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.1e-08 63.5 46 67.4
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.1e-08 63.5 46 67.4
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.8e-08 63.2 93 37.6
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 5.2e-07 58.9 50 48.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.8e-07 58.5 64 50.0
arahy.Tifrunner.gnm1.ann1.W08ZR1 Arachis hypogaea HOM05D001932 ORTHO05D026884 1.2e-06 57.8 64 56.2
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 1.2e-06 57.8 81 39.5
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 1.2e-06 57.8 71 49.3


User provided reference genes

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