Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.5e-56 221.9 109 100.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 7.0e-27 124.0 100 61.0
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 7.7e-26 120.6 99 65.7
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 7.7e-26 120.6 90 66.7
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.3e-25 119.0 106 61.3
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.9e-24 115.9 97 64.9
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 4.2e-24 114.8 87 64.4
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 4.7e-23 111.3 88 61.4
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 6.1e-23 110.9 86 66.3
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.0e-22 108.6 88 65.9
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 5.2e-22 107.8 103 57.3
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.0e-21 105.9 85 64.7
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 2.6e-21 105.5 101 58.4
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 5.7e-21 104.4 88 59.1
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 7.5e-21 104.0 90 58.9
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 3.7e-20 101.7 88 56.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 4.1e-19 98.2 94 60.6
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 7.0e-19 97.4 96 57.3
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.0e-18 95.9 88 58.0
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.0e-18 95.9 87 59.8
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.8e-17 91.7 86 57.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 3.8e-17 91.7 86 58.1
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 3.8e-17 91.7 94 57.4
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 1.1e-16 90.1 47 91.5
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-16 89.0 97 50.5
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 4.3e-16 88.2 91 53.8
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 9.5e-16 87.0 47 89.4
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.6e-15 86.3 100 46.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.7e-15 84.7 76 55.3
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-14 83.6 85 52.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.6e-13 79.0 77 53.2
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 5.8e-13 77.8 79 50.6
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 5.8e-13 77.8 79 50.6
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.8e-13 77.8 95 45.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 5.8e-13 77.8 76 55.3
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 9.8e-13 77.0 97 46.4
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.8e-13 77.0 103 40.8
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-12 76.3 103 40.8
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.2e-12 75.9 103 40.8
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 2.2e-12 75.9 77 51.9
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.9e-12 74.7 103 38.8
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 8.3e-12 73.9 85 45.9
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.1e-11 73.6 107 41.1
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 2.4e-11 72.4 97 41.2
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.2e-11 72.0 87 36.8
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 3.2e-11 72.0 100 40.0
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 4.1e-11 71.6 76 51.3
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.4e-11 71.2 82 46.3
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.2e-11 70.5 87 35.6
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 9.2e-11 70.5 76 48.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 9.2e-11 70.5 94 43.6
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 9.2e-11 70.5 89 43.8
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.6e-10 69.7 87 35.6
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.7e-10 68.9 96 37.5
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.5e-10 68.6 74 43.2
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.5e-10 68.6 111 39.6
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.6e-10 68.2 96 37.5
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 4.6e-10 68.2 71 45.1
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 4.6e-10 68.2 81 45.7
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 6.0e-10 67.8 74 41.9
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.0e-10 67.8 98 37.8
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 7.8e-10 67.4 93 41.9
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 7.8e-10 67.4 79 44.3
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.0e-09 67.0 76 44.7
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 1.0e-09 67.0 86 40.7
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.0e-09 67.0 82 41.5
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.3e-09 66.6 91 41.8
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.7e-09 66.2 90 38.9
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 3.0e-09 65.5 96 37.5
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 5.0e-09 64.7 62 48.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 6.6e-09 64.3 80 41.2
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 6.6e-09 64.3 84 44.0
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 8.6e-09 63.9 87 36.8
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 8.6e-09 63.9 92 41.3
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 8.6e-09 63.9 73 42.5
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.1e-08 63.5 82 40.2
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.5e-08 63.2 106 38.7
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.9e-08 62.8 80 41.2
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.9e-08 62.8 72 40.3
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.9e-08 62.8 80 38.8
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-08 62.4 76 42.1
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 3.3e-08 62.0 83 38.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-08 62.0 70 44.3
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-08 62.0 70 44.3
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 5.6e-08 61.2 85 40.0
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.3e-08 60.8 90 41.1
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 9.5e-08 60.5 88 44.3
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.2e-07 60.1 79 40.5
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.8e-07 58.9 106 36.8
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 4.7e-07 58.2 89 43.8
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 4.7e-07 58.2 92 34.8
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 6.2e-07 57.8 63 46.0
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 6.2e-07 57.8 86 40.7
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 6.2e-07 57.8 97 35.1
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 6.2e-07 57.8 83 34.9
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.1e-06 57.0 80 38.8
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 1.1e-06 57.0 92 32.6
Lsat_1_v5_gn_7_89361 Lactuca sativa HOM05D007227 ORTHO05D002252 1.4e-06 56.6 45 51.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.4e-06 56.6 109 32.1
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.4e-06 56.6 78 41.0
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 2.3e-06 55.8 98 39.8
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.1e-06 55.5 77 35.1
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 3.1e-06 55.5 80 40.0
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.2e-06 54.7 97 35.1
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.2e-06 54.7 97 35.1
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.2e-06 54.7 96 35.4
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 6.8e-06 54.3 64 37.5
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 6.8e-06 54.3 97 44.3
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 8.9e-06 53.9 89 39.3
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 8.9e-06 53.9 114 34.2


User provided reference genes

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