Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 4.2e-56 221.1 108 100.0
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.1e-47 192.2 110 87.3
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 6.7e-46 187.2 110 83.6
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.5e-45 185.3 105 88.6
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.5e-45 185.3 105 88.6
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.5e-45 185.3 105 88.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.5e-45 185.3 110 84.5
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.3e-44 183.0 110 83.6
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.5e-42 176.0 110 80.0
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.0e-42 175.6 105 82.9
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 2.0e-42 175.6 110 79.1
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 4.5e-42 174.5 110 78.2
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 4.5e-42 174.5 110 77.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.8e-42 174.1 110 76.4
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 7.6e-42 173.7 109 78.9
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.0e-41 173.3 110 76.4
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.3e-41 172.9 110 77.3
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.3e-41 172.9 110 78.2
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 3.8e-41 171.4 110 76.4
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 8.4e-41 170.2 105 80.0
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-40 169.9 107 81.3
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.5e-40 168.7 105 78.1
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 3.2e-40 168.3 110 72.7
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.2e-40 167.9 110 73.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 4.2e-40 167.9 110 73.6
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.1e-40 167.2 110 72.7
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 7.1e-40 167.2 110 73.6
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 9.3e-40 166.8 110 74.5
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 9.3e-40 166.8 110 74.5
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.6e-39 166.0 104 77.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.6e-39 166.0 110 78.2
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.1e-39 165.6 110 71.8
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 4.6e-39 164.5 110 71.8
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 6.0e-39 164.1 110 76.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 6.0e-39 164.1 110 72.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.0e-38 163.3 105 76.2
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.8e-38 162.5 104 76.0
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 2.3e-38 162.2 110 76.4
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 8.7e-38 160.2 110 71.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.9e-37 159.1 108 74.1
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.5e-37 158.7 108 72.2
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.3e-37 158.3 106 72.6
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 3.3e-37 158.3 110 72.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 4.3e-37 157.9 105 73.3
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 4.3e-37 157.9 108 71.3
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 7.4e-37 157.1 103 74.8
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 7.4e-37 157.1 109 72.5
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.7e-37 156.8 105 70.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.7e-37 156.8 105 70.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.3e-36 156.4 105 73.3
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.6e-36 156.0 108 70.4
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 2.2e-36 155.6 109 71.6
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.8e-36 155.2 105 72.4
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 2.8e-36 155.2 105 68.6
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.7e-36 154.8 105 72.4
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.7e-36 154.8 105 70.5
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 4.8e-36 154.5 105 71.4
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.8e-36 154.5 110 69.1
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 8.2e-36 153.7 107 67.3
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.1e-35 153.3 108 69.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.8e-35 152.5 106 67.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.4e-35 152.1 105 69.5
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.4e-35 152.1 105 71.4
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 6.9e-35 150.6 105 69.5
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.9e-35 150.6 105 71.4
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.2e-34 149.8 105 69.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-34 149.4 106 67.9
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-34 149.4 106 67.9
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.5e-34 149.4 105 66.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.0e-34 149.1 110 65.5
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 3.4e-34 148.3 106 68.9
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.4e-34 148.3 105 66.7
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 5.9e-34 147.5 106 68.9
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 5.9e-34 147.5 105 66.7
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 5.9e-34 147.5 105 67.6
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 5.9e-34 147.5 110 67.3
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.0e-33 146.7 106 67.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.3e-33 146.4 105 64.8
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.2e-33 145.6 110 67.3
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 2.2e-33 145.6 105 63.8
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.8e-33 144.8 103 66.0
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 5.0e-33 144.4 106 66.0
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 6.5e-33 144.1 107 67.3
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 6.5e-33 144.1 103 67.0
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.1e-32 143.3 106 66.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.1e-32 143.3 103 65.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.4e-32 142.9 103 66.0
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.4e-32 142.9 103 66.0
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.4e-32 142.9 103 67.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.4e-32 142.9 103 65.0
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.9e-32 142.5 105 67.6
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.9e-32 142.5 102 66.7
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 3.2e-32 141.7 103 67.0
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 4.2e-32 141.4 106 67.0
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.5e-32 141.0 106 66.0
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 5.5e-32 141.0 106 65.1
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-31 139.4 103 65.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.6e-31 139.4 103 64.1
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 3.6e-31 138.3 103 64.1
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 4.6e-31 137.9 105 61.9
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 7.9e-31 137.1 110 63.6
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 7.9e-31 137.1 104 64.4
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.3e-30 135.6 134 53.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 5.1e-30 134.4 107 63.6
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 6.7e-30 134.0 93 69.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 3.3e-29 131.7 135 52.6
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.1e-27 126.7 89 71.9
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.8e-25 118.2 73 74.0
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.5e-25 117.1 103 52.4
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.1e-24 116.7 74 77.0
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.8e-22 109.4 74 67.6
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.8e-22 109.4 74 67.6
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.8e-22 109.4 74 67.6
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.3e-22 109.0 107 47.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.3e-22 109.0 105 49.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.1e-22 107.8 106 47.2
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.1e-21 106.7 74 67.6
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-21 106.7 56 83.9
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.5e-21 106.3 75 69.3
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.5e-21 106.3 75 69.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.5e-21 106.3 75 69.3
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.5e-21 106.3 75 69.3
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.0e-21 105.9 103 53.4
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.4e-21 104.8 91 52.7
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.4e-19 99.8 99 53.5
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-19 97.4 108 45.4
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.4e-18 95.1 103 43.7
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.3e-17 93.2 74 64.9
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.9e-17 92.0 73 68.5
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 5.0e-17 91.3 54 75.9
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.5e-16 89.0 56 71.4
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.5e-16 89.0 56 71.4
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.2e-16 88.6 67 65.7
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.7e-15 85.5 97 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.7e-15 85.5 73 50.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.0e-15 84.0 44 79.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.0e-14 82.0 82 54.9
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.0e-13 79.3 104 38.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 3.1e-11 72.0 43 65.1
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-08 63.2 81 42.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 9.4e-08 60.5 107 33.6
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.0e-06 55.1 56 50.0
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.2e-06 54.7 80 38.8


User provided reference genes

Program Settings