Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 1.7e-132 476.1 257 100.0
Glyma.14G013800 Glycine max HOM05D014115 ORTHO05D004704 2.0e-104 382.9 254 85.8
Phvul.008G278800 Phaseolus vulgaris HOM05D014115 ORTHO05D004704 1.3e-79 300.4 260 71.5
VMungo0647G1046 Vigna mungo HOM05D014115 ORTHO05D004704 2.3e-68 263.1 238 66.4
Medtr5g095710 Medicago truncatula HOM05D014115 ORTHO05D004704 3.2e-46 189.5 272 52.2
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 5.3e-33 145.6 276 43.8
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 5.9e-32 142.1 278 44.2
TPR.G8608 Trifolium pratense HOM05D014115 ORTHO05D015996 1.1e-30 137.9 262 46.2
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 5.5e-30 135.6 261 44.8
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 7.9e-29 131.7 281 42.3
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 6.7e-28 128.6 288 39.9
Medtr3g058930 Medicago truncatula HOM05D014115 ORTHO05D004704 2.0e-24 117.1 313 36.7
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 4.2e-22 109.4 229 42.8
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 7.4e-19 98.6 274 36.9
Psat5g169040 Pisum sativum HOM05D014115 ORTHO05D004704 7.4e-19 98.6 270 36.7
TPR.G35467 Trifolium pratense HOM05D014115 ORTHO05D004704 4.8e-18 95.9 314 33.8
Ca_22134_v3 Cicer arietinum L. HOM05D014115 ORTHO05D004704 3.1e-17 93.2 249 36.9
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 9.1e-17 91.7 233 35.6
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 1.7e-15 87.4 229 37.6
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 5.5e-14 82.4 235 36.2
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 5.5e-14 82.4 235 36.2
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 7.2e-14 82.0 263 34.6
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 2.7e-13 80.1 241 32.0
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 5.2e-12 75.9 255 35.3
Lalb_Chr15g0082031 Lupinus albus HOM05D005849 ORTHO05D004704 4.4e-11 72.8 207 34.3
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 2.2e-10 70.5 129 40.3
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.1e-09 68.2 259 30.9
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 1.4e-09 67.8 257 31.9
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.4e-09 67.8 252 30.2
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.4e-09 67.0 245 34.7
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 3.1e-09 66.6 271 31.7
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.1e-09 66.6 162 34.0
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 5.3e-09 65.9 252 29.4
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.2e-08 64.7 267 29.2
Cfa020199 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.6e-08 64.3 236 33.9
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 1.6e-08 64.3 123 40.7
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.6e-08 63.5 98 43.9
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 2.6e-08 63.5 99 43.4
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 2.6e-08 63.5 244 29.5
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 3.5e-08 63.2 246 36.6
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 5.9e-08 62.4 266 31.2
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.2e-07 60.5 245 31.8
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 2.9e-07 60.1 164 34.8
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 2.9e-07 60.1 268 29.5
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.8e-07 59.7 165 33.3
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 3.8e-07 59.7 118 36.4
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 5.0e-07 59.3 243 29.6
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 5.0e-07 59.3 231 32.0
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.1e-06 58.2 252 31.0
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 1.1e-06 58.2 70 48.6
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.9e-06 57.4 231 28.1
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 1.9e-06 57.4 244 29.9
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.5e-06 57.0 221 32.6
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 5.5e-06 55.8 254 29.5
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 7.2e-06 55.5 101 40.6
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 9.4e-06 55.1 280 28.6
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 9.4e-06 55.1 229 29.7
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 9.4e-06 55.1 251 28.7
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 9.4e-06 55.1 115 35.7


User provided reference genes

Program Settings