Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G299902 Glycine max HOM05D000384 ORTHO05D007626 1.4e-66 256.1 127 100.0
Glyma.14G014000 Glycine max HOM05D000384 ORTHO05D007626 3.2e-63 245.0 127 95.3
Lj6g0018885 Lotus japonicus HOM05D000384 ORTHO05D007626 7.8e-62 240.4 127 92.1
Medtr5g095670 Medicago truncatula HOM05D000384 ORTHO05D007626 3.0e-61 238.4 127 90.6
Cfa020201 Carpinus fangiana HOM05D000384 ORTHO05D007626 1.5e-60 236.1 127 90.6
Ca_06390_v3 Cicer arietinum L. HOM05D000384 ORTHO05D007626 1.5e-60 236.1 127 89.0
Haze_09814 Corylus avellana HOM05D000384 ORTHO05D007626 3.3e-60 235.0 127 90.6
VMungo0647G2472 Vigna mungo HOM05D000384 ORTHO05D007626 4.3e-60 234.6 127 90.6
arahy.Tifrunner.gnm1.ann1.0880BE Arachis hypogaea HOM05D000384 ORTHO05D007626 7.3e-60 233.8 127 90.6
arahy.Tifrunner.gnm1.ann1.KE1FF5 Arachis hypogaea HOM05D000384 ORTHO05D007626 7.3e-60 233.8 127 90.6
Phvul.008G278600 Phaseolus vulgaris HOM05D000384 ORTHO05D007626 7.3e-60 233.8 127 91.3
Atru.chr2.3677 Acer truncatum HOM05D000384 ORTHO05D007626 9.5e-60 233.4 127 88.2
Ciclev10008354m.g Citrus clementina HOM05D000384 ORTHO05D007626 9.5e-60 233.4 127 89.0
Lalb_Chr10g0107391 Lupinus albus HOM05D000384 ORTHO05D007626 9.5e-60 233.4 127 89.0
Manes.15G060800 Manihot esculenta HOM05D000384 ORTHO05D007626 2.8e-59 231.9 127 88.2
TPR.G8616 Trifolium pratense HOM05D000384 ORTHO05D007626 3.6e-59 231.5 127 89.0
Duzib213G0089 Durio zibethinus HOM05D000384 ORTHO05D007626 6.2e-59 230.7 127 86.6
Sabra16G0240300 Salix brachista HOM05D000384 ORTHO05D007626 6.2e-59 230.7 125 88.0
Thecc.07G015000 Theobroma cacao HOM05D000384 ORTHO05D007626 6.2e-59 230.7 127 87.4
MD03G1184200 Malus domestica HOM05D000384 ORTHO05D007626 1.1e-58 229.9 125 87.2
THA.LOC104815696 Tarenaya hassleriana HOM05D000384 ORTHO05D007626 1.1e-58 229.9 127 87.4
FAN11G3019 Fragaria x ananassa HOM05D000384 ORTHO05D007626 1.4e-58 229.6 125 87.2
CARHR045580 Cardamine hirsuta HOM05D000384 ORTHO05D007626 1.8e-58 229.2 127 85.0
CiPaw.11G203000 Carya illinoinensis HOM05D000384 ORTHO05D007626 1.8e-58 229.2 127 87.4
RcHm_v2.0_Chr5g0053771 Rosa chinensis HOM05D000384 ORTHO05D007626 1.8e-58 229.2 125 87.2
CANSAT11G1006 Cannabis sativa HOM05D000384 ORTHO05D007626 2.4e-58 228.8 124 87.1
Gorai.009G449800 Gossypium raimondii HOM05D000384 ORTHO05D007626 2.4e-58 228.8 127 85.8
Actinidia05013 Actinidia chinensis HOM05D000384 ORTHO05D007626 3.1e-58 228.4 127 87.4
FvH4_3g29380 Fragaria vesca HOM05D000384 ORTHO05D007626 3.1e-58 228.4 125 86.4
FAN16G2196 Fragaria x ananassa HOM05D000384 ORTHO05D007626 3.1e-58 228.4 125 86.4
BcaNung06013 Brassica carinata HOM05D000384 ORTHO05D007626 4.0e-58 228.0 127 85.0
QL08p004240 Quercus lobata HOM05D000384 ORTHO05D007626 4.0e-58 228.0 126 88.1
BcaC08g43660 Brassica carinata HOM05D000384 ORTHO05D007626 5.2e-58 227.6 127 85.0
BolC6t36164H Brassica oleracea HOM05D000384 ORTHO05D007626 5.2e-58 227.6 127 85.0
BraSC56t46397Z Brassica rapa HOM05D000384 ORTHO05D007626 5.2e-58 227.6 127 85.0
CSS0037227 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D007626 5.2e-58 227.6 127 85.0
Gohir.A04G006300 Gossypium hirsutum HOM05D000384 ORTHO05D007626 5.2e-58 227.6 127 85.0
Potri.001G367000 Populus trichocarpa HOM05D000384 ORTHO05D007626 5.2e-58 227.6 125 86.4
AT1G55880 Arabidopsis thaliana HOM05D000384 ORTHO05D007626 6.8e-58 227.3 127 85.0
Thhalv10011512m.g Eutrema salsugineum HOM05D000384 ORTHO05D007626 6.8e-58 227.3 127 85.0
FAN25G1421 Fragaria x ananassa HOM05D000384 ORTHO05D007626 6.8e-58 227.3 125 85.6
Peaxi162Scf01164g00128 Petunia axillaris HOM05D000384 ORTHO05D007626 6.8e-58 227.3 127 85.8
Nn1g07495 Nelumbo nucifera HOM05D000384 ORTHO05D007626 8.9e-58 226.9 125 86.4
Prupe.4G242200 Prunus persica HOM05D000384 ORTHO05D007626 8.9e-58 226.9 125 85.6
GSVIVG01014666001 Vitis vinifera HOM05D000384 ORTHO05D007626 8.9e-58 226.9 127 85.8
Aa31LG10G310 Aethionema arabicum HOM05D000384 ORTHO05D007626 1.2e-57 226.5 125 86.4
Ah.04g166530 Amaranthus hybridus HOM05D000384 ORTHO05D007626 1.5e-57 226.1 125 85.6
C06p10800 Brassica napus HOM05D000384 ORTHO05D007626 1.5e-57 226.1 127 84.3
AUR62017086 Chenopodium quinoa HOM05D000384 ORTHO05D007626 2.6e-57 225.3 125 84.8
Nitab4.5_0000461g0240 Nicotiana tabacum HOM05D000384 ORTHO05D007626 2.6e-57 225.3 127 85.0
Psat2g007720 Pisum sativum HOM05D000384 ORTHO05D007626 2.6e-57 225.3 127 85.8
AL1G64020 Arabidopsis lyrata HOM05D000384 ORTHO05D007626 4.4e-57 224.6 127 84.3
Gohir.D05G383200 Gossypium hirsutum HOM05D000384 ORTHO05D007626 4.4e-57 224.6 127 84.3
Sp1g41480 Schrenkiella parvula HOM05D000384 ORTHO05D007626 4.4e-57 224.6 127 84.3
AUR62036443 Chenopodium quinoa HOM05D000384 ORTHO05D007626 7.6e-57 223.8 125 84.0
TWI38G0222 Tripterygium wilfordii HOM05D000384 ORTHO05D007626 7.6e-57 223.8 127 83.5
ClCG09G021240 Citrullus lanatus HOM05D000384 ORTHO05D007626 9.9e-57 223.4 123 87.8
Nitab4.5_0014607g0020 Nicotiana tabacum HOM05D000384 ORTHO05D007626 9.9e-57 223.4 127 85.0
PGSC0003DMG400022283 Solanum tuberosum HOM05D000384 ORTHO05D007626 1.3e-56 223.0 123 87.0
EL10Ac4g07593 Beta vulgaris HOM05D000384 ORTHO05D007626 1.7e-56 222.6 125 83.2
CAN.G337.5 Capsicum annuum HOM05D000384 ORTHO05D007626 1.7e-56 222.6 127 83.5
AUR62036410 Chenopodium quinoa HOM05D000384 ORTHO05D007626 1.7e-56 222.6 125 84.0
Rhsim06G0228900 Rhododendron simsii HOM05D000384 ORTHO05D007626 1.7e-56 222.6 125 86.4
TAR629G2823 Trochodendron aralioides HOM05D000384 ORTHO05D007626 1.7e-56 222.6 126 86.5
Aqoxy1G04246 Aquilegia oxysepala HOM05D000384 ORTHO05D007626 2.2e-56 222.2 125 84.0
Cc07_g14520 Coffea canephora HOM05D000384 ORTHO05D007626 2.2e-56 222.2 127 84.3
FAN21G4039 Fragaria x ananassa HOM05D000384 ORTHO05D007626 2.2e-56 222.2 125 84.8
MBI16_g22429_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D007626 2.2e-56 222.2 124 84.7
Sed0020019 Sechium edule HOM05D000384 ORTHO05D007626 2.2e-56 222.2 123 87.8
Carub.0001s4447 Capsella rubella HOM05D000384 ORTHO05D007626 3.8e-56 221.5 127 83.5
SalBow8G2011 Salvia bowleyana HOM05D000384 ORTHO05D007626 3.8e-56 221.5 125 83.2
Hund01899 Selenicereus undatus HOM05D000384 ORTHO05D007626 4.9e-56 221.1 125 83.2
DCAR_017084 Daucus carota HOM05D000384 ORTHO05D007626 6.4e-56 220.7 126 83.3
Lj8A178T73 Lonicera japonica HOM05D000384 ORTHO05D007626 6.4e-56 220.7 125 83.2
COL.COLO4_09819 Corchorus olitorius HOM05D000384 ORTHO05D007626 8.4e-56 220.3 123 84.6
PGR083G0681 Punica granatum HOM05D000384 ORTHO05D007626 8.4e-56 220.3 127 82.7
Solyc07g065470.4 Solanum lycopersicum HOM05D000384 ORTHO05D007626 1.1e-55 219.9 127 83.5
ATR0827G113 Amborella trichopoda HOM05D000384 ORTHO05D007626 1.4e-55 219.5 127 81.9
Os03g0215800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D007626 1.9e-55 219.2 123 84.6
Sopen07g033680 Solanum pennellii HOM05D000384 ORTHO05D007626 1.9e-55 219.2 123 85.4
Eucgr.F02054 Eucalyptus grandis HOM05D000384 ORTHO05D007626 2.4e-55 218.8 125 84.0
Sc03g0011190 Simmondsia chinensis HOM05D000384 ORTHO05D007626 2.4e-55 218.8 127 81.1
MELO3C024929.2 Cucumis melo HOM05D000384 ORTHO05D007626 4.1e-55 218.0 123 84.6
Zm00001eb008720 Zea mays HOM05D000384 ORTHO05D007626 5.4e-55 217.6 123 83.7
HPP92_007732 Vanilla planifolia HOM05D000384 ORTHO05D007626 1.2e-54 216.5 123 82.9
SEGI_39215 Sequoiadendron giganteum HOM05D000384 ORTHO05D007626 1.6e-54 216.1 124 83.1
CsaV3_7G015080 Cucumis sativus L. HOM05D000384 ORTHO05D007626 2.7e-54 215.3 123 83.7
SGA_v2.0_scaffold168G38555 Striga asiatica HOM05D000384 ORTHO05D007626 6.0e-54 214.2 124 79.8
PSO832G3455 Papaver somniferum HOM05D000384 ORTHO05D007626 7.8e-54 213.8 127 78.7
Migut.M01659 Erythranthe guttata HOM05D000384 ORTHO05D007626 1.3e-53 213.0 125 80.8
Lsat_1_v5_gn_5_1441 Lactuca sativa HOM05D000384 ORTHO05D007626 1.3e-53 213.0 123 82.9
SHI48810 Sapria himalayana HOM05D000384 ORTHO05D007626 3.0e-53 211.8 125 80.0
CDE04G0196 Ceratophyllum demersum HOM05D000384 ORTHO05D007626 5.1e-53 211.1 125 81.6
ECA246G1272 Erigeron canadensis HOM05D000384 ORTHO05D007626 5.1e-53 211.1 127 81.1
HanXRQChr05g0159901 Helianthus annuus HOM05D000384 ORTHO05D007626 8.7e-53 210.3 127 79.5
MSTRG.15792 Avicennia marina HOM05D000384 ORTHO05D007626 1.1e-52 209.9 125 80.0
Mapoly0001s0224 Marchantia polymorpha HOM05D000384 ORTHO05D007626 5.6e-52 207.6 123 79.7
SMO118G0222 Selaginella moellendorffii HOM05D000384 ORTHO05D007626 7.3e-52 207.2 123 78.9
unitig_62.g23299 Utricularia gibba HOM05D001707 ORTHO05D007626 2.8e-51 205.3 125 76.8
Pp3c5_7330 Physcomitrium patens HOM05D000384 ORTHO05D007626 8.1e-51 203.8 123 76.4
CBR_g17931 Chara braunii HOM05D000384 ORTHO05D007626 2.4e-47 192.2 124 71.8
Cre16.g664250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D007626 2.5e-44 182.2 122 68.9
Oeu014354.1 Olea europaea HOM05D000384 ORTHO05D007626 5.6e-44 181.0 142 66.9
PRCOL_00006749 Prasinoderma coloniale HOM05D000384 ORTHO05D007626 1.3e-32 143.3 115 56.5
MCO11G328 Micromonas commoda HOM05D000384 ORTHO05D007626 6.4e-32 141.0 115 57.4
QL08p058314 Quercus lobata HOM05D000384 ORTHO05D007626 1.1e-31 140.2 76 88.2
QL08p004295 Quercus lobata HOM05D000384 ORTHO05D007626 9.3e-31 137.1 109 66.1
Lsat_1_v5_gn_5_29401 Lactuca sativa HOM05D000384 ORTHO05D007626 3.0e-29 132.1 90 72.2
MD11G1201000 Malus domestica HOM05D000384 ORTHO05D007626 7.6e-25 117.5 80 73.8
PRCOL_00001906 Prasinoderma coloniale HOM05D000384 ORTHO05D007626 7.1e-23 110.9 113 48.7
MBI12_g11804_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D007626 1.2e-22 110.2 71 73.2
Hma1.2p1_0036F.1_g022460 Hydrangea macrophylla HOM05D000384 ORTHO05D007626 7.4e-20 100.9 56 83.9
Cfa022405 Carpinus fangiana HOM05D000384 ORTHO05D007626 1.8e-18 96.3 114 42.1
Pp3c15_17700 Physcomitrium patens HOM05D000384 ORTHO05D007626 7.2e-15 84.3 110 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1397 Anthoceros agrestis HOM05D000384 ORTHO05D007626 1.6e-14 83.2 118 39.8
Cfa023873 Carpinus fangiana HOM05D000384 ORTHO05D007626 2.7e-14 82.4 104 41.3
Mapoly0001s0214 Marchantia polymorpha HOM05D000384 ORTHO05D007626 4.6e-14 81.6 110 39.1
Mapoly0003s0133 Marchantia polymorpha HOM05D000384 ORTHO05D007626 1.0e-13 80.5 105 40.0
MCO05G747 Micromonas commoda HOM05D000384 ORTHO05D049141 8.2e-11 70.9 99 37.4
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.4e-10 70.1 41 78.0
Lsat_1_v5_gn_2_64160 Lactuca sativa HOM05D000384 ORTHO05D038090 1.5e-09 66.6 41 68.3
MCO11G363 Micromonas commoda HOM05D000384 ORTHO05D000468 1.5e-09 66.6 93 36.6
PRCOL_00002411 Prasinoderma coloniale HOM05D000384 ORTHO05D334044 2.7e-06 55.8 87 32.2
PRCOL_00002649 Prasinoderma coloniale HOM05D000384 ORTHO05D049141 7.9e-06 54.3 83 32.5


User provided reference genes

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