Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 9.7e-303 1042.7 543 100.0
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 3.0e-280 968.0 546 92.7
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 6.3e-262 907.1 545 87.7
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 8.6e-259 896.7 545 87.2
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 6.8e-248 860.5 545 83.1
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 5.2e-232 807.7 547 78.6
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.7e-227 792.7 550 76.7
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.9e-226 789.3 542 77.3
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.1e-221 773.5 544 75.0
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.5e-218 763.1 552 72.5
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.6e-217 759.6 551 71.9
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 8.1e-217 757.3 551 73.0
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 3.1e-216 755.4 547 73.7
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 1.5e-215 753.1 551 72.2
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 5.8e-215 751.1 540 73.3
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 4.2e-213 745.0 481 77.8
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 5.4e-213 744.6 549 70.1
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 7.9e-212 740.7 477 76.9
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.8e-211 739.6 525 72.4
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 3.0e-211 738.8 441 85.0
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 8.7e-211 737.3 471 78.1
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 8.7e-211 737.3 462 82.0
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 1.9e-210 736.1 557 71.1
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.6e-209 733.0 554 69.9
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 2.8e-209 732.3 533 73.0
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 4.8e-209 731.5 539 70.7
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.4e-208 729.9 514 72.6
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 2.0e-207 726.1 547 69.1
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 5.8e-207 724.5 550 70.2
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 6.5e-206 721.1 517 72.1
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 3.2e-205 718.8 471 75.8
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 5.5e-205 718.0 510 71.8
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 7.1e-205 717.6 555 67.4
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 3.5e-204 715.3 530 69.4
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 1.3e-203 713.4 548 68.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 5.1e-203 711.4 562 66.9
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.9e-202 709.5 514 71.6
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 2.5e-202 709.1 546 67.2
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 1.3e-201 706.8 548 67.5
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.6e-201 706.4 536 69.0
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 4.8e-201 704.9 548 67.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 8.2e-201 704.1 502 70.1
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.4e-200 703.4 528 68.9
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.4e-200 703.4 536 68.7
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 3.1e-200 702.2 544 67.8
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 4.0e-200 701.8 546 67.4
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 9.0e-200 700.7 472 73.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 5.8e-199 698.0 526 67.9
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 5.0e-198 694.9 460 78.7
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.2e-196 690.3 541 67.1
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 2.1e-196 689.5 539 68.8
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.7e-196 689.1 540 66.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.8e-195 686.4 526 66.9
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.3e-195 686.0 545 64.6
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.3e-195 686.0 478 72.8
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 2.3e-195 686.0 496 70.0
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 3.9e-195 685.3 516 67.8
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 6.7e-195 684.5 578 64.9
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.1e-194 683.7 478 72.2
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 3.3e-194 682.2 522 69.5
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 5.3e-192 674.9 477 71.3
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 9.0e-192 674.1 533 66.0
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 4.5e-191 671.8 444 75.2
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 8.5e-190 667.5 506 67.6
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 7.2e-189 664.5 550 61.8
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 9.4e-189 664.1 514 66.5
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 4.3e-186 655.2 477 67.3
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 5.7e-186 654.8 535 60.9
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 5.7e-186 654.8 476 68.5
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.3e-185 653.7 471 68.4
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.3e-185 653.7 561 63.6
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-185 653.3 514 66.9
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.8e-185 651.7 473 68.1
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 4.1e-184 648.7 560 60.4
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 9.1e-184 647.5 504 65.3
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 2.0e-183 646.4 490 65.9
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 3.4e-183 645.6 473 67.7
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 2.9e-182 642.5 472 68.2
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.1e-181 640.6 477 66.7
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 5.5e-181 638.3 547 59.6
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.4e-179 633.6 476 67.6
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.8e-179 633.3 544 59.6
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 3.3e-178 629.0 553 59.0
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 9.7e-178 627.5 553 60.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 6.3e-177 624.8 553 60.2
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.0e-171 607.4 453 66.4
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 8.8e-171 604.4 453 66.2
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 7.7e-167 591.3 515 59.4
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 1.3e-166 590.5 444 66.2
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 9.4e-165 584.3 550 58.9
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 2.1e-164 583.2 477 62.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 4.7e-164 582.0 546 56.6
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 8.8e-155 551.2 501 56.5
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 5.4e-152 542.0 454 57.3
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 2.7e-151 539.7 489 59.3
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 9.5e-149 531.2 374 72.2
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 2.1e-148 530.0 488 60.0
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 4.7e-148 528.9 540 55.0
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 5.2e-139 498.8 389 63.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.5e-135 486.1 411 62.0
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 1.0e-134 484.6 470 50.6
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.5e-130 470.7 385 64.9
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 3.0e-126 456.4 467 49.0
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 4.3e-125 452.6 544 44.5
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.1e-124 450.3 476 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 1.7e-121 440.7 469 48.4
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 4.4e-114 416.0 482 44.6
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 5.8e-114 415.6 428 57.2
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 4.9e-105 386.0 440 43.4
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 4.2e-72 276.6 466 33.3
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.2e-65 254.2 137 94.9
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 6.1e-63 246.1 134 90.3
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 2.8e-60 237.3 426 32.9
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 5.3e-51 206.5 386 40.2
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 3.1e-43 180.6 144 65.3
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 5.5e-40 169.9 92 93.5
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 4.7e-39 166.8 239 41.4
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.6e-37 161.0 107 74.8
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.3e-36 158.7 94 87.2
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 1.9e-32 144.8 481 23.9
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.5e-24 117.9 68 83.8
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 6.2e-23 113.2 113 60.2
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 6.4e-20 103.2 210 35.7
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 1.9e-19 101.7 196 34.7
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.2e-18 99.0 221 33.0
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.5e-16 91.3 119 47.9
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 4.4e-13 80.5 78 57.7
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 5.1e-09 67.0 51 56.9
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 2.5e-08 64.7 459 20.9


User provided reference genes

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