Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 1.1e-79 300.1 172 100.0
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 2.3e-69 265.8 172 85.5
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 7.6e-68 260.8 172 82.0
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 8.6e-64 247.3 175 78.3
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 2.1e-49 199.5 175 68.6
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 2.7e-49 199.1 175 68.0
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 1.5e-47 193.4 174 66.1
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 5.6e-47 191.4 174 65.5
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 7.4e-47 191.0 172 63.4
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 2.2e-43 179.5 179 63.1
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 2.9e-43 179.1 181 65.2
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 4.6e-41 171.8 172 59.3
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 1.1e-39 167.2 172 55.8
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 4.3e-39 165.2 173 55.5
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 4.8e-38 161.8 172 55.2
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 6.2e-38 161.4 173 57.2
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 8.2e-38 161.0 173 56.6
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.8e-37 159.8 172 54.1
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 1.5e-36 156.8 172 55.2
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 2.6e-36 156.0 172 52.3
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 5.8e-36 154.8 172 53.5
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.3e-35 153.7 180 61.1
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 3.8e-35 152.1 172 54.1
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 4.9e-35 151.8 174 52.9
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 8.4e-35 151.0 173 51.4
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.1e-34 150.6 170 52.9
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 2.5e-34 149.4 172 50.0
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.5e-34 149.4 172 50.0
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.2e-34 149.1 172 50.0
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 3.2e-34 149.1 173 51.4
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 4.2e-34 148.7 173 51.4
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 7.1e-34 147.9 172 50.0
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 9.3e-34 147.5 170 49.4
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.2e-33 147.1 171 50.9
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.5e-33 145.6 172 48.8
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.5e-33 145.6 172 48.8
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 4.6e-33 145.2 172 50.6
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 4.6e-33 145.2 167 50.9
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.0e-32 144.1 172 52.3
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.3e-32 143.7 172 52.9
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 6.7e-32 141.4 173 53.8
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.1e-31 140.6 172 51.2
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 2.2e-30 136.3 171 47.4
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.2e-30 136.3 173 49.1
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 4.8e-30 135.2 173 48.6
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 4.8e-30 135.2 172 48.8
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 6.3e-30 134.8 172 45.9
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.1e-29 134.0 173 48.0
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.4e-29 132.9 172 45.9
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 9.0e-29 131.0 170 50.0
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.2e-28 130.6 175 46.9
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 1.5e-28 130.2 172 48.8
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 5.9e-28 128.3 171 48.0
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 2.2e-27 126.3 174 48.9
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.2e-27 126.3 172 44.8
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.2e-27 126.3 172 44.8
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 2.2e-27 126.3 172 46.5
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 2.5e-26 122.9 173 47.4
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 3.2e-26 122.5 169 46.2
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 7.2e-26 121.3 172 49.4
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 7.2e-26 121.3 173 46.8
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 2.7e-25 119.4 167 47.9
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 3.6e-25 119.0 174 45.4
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.6e-25 119.0 172 47.1
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 7.9e-25 117.9 167 46.7
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 1.0e-24 117.5 167 47.3
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-24 117.1 172 47.1
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.1e-24 115.2 170 45.3
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 6.7e-24 114.8 172 44.2
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 1.5e-23 113.6 194 41.8
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 2.5e-23 112.8 172 45.9
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 2.5e-23 112.8 177 44.1
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 3.3e-23 112.5 169 42.6
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-22 110.5 161 46.6
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.3e-22 110.5 169 42.6
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.3e-22 110.5 175 41.7
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 1.7e-22 110.2 192 39.6
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 1.7e-22 110.2 192 39.6
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 1.7e-22 110.2 192 39.6
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 1.7e-22 110.2 192 39.6
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 2.2e-22 109.8 175 41.7
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 2.8e-22 109.4 215 38.1
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.8e-22 109.4 174 46.0
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 2.8e-22 109.4 197 43.1
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 4.8e-22 108.6 194 44.3
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 6.3e-22 108.2 171 44.4
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 8.2e-22 107.8 175 41.1
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 1.4e-21 107.1 215 37.7
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 1.4e-21 107.1 192 38.0
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.4e-21 107.1 222 36.9
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 2.4e-21 106.3 172 43.0
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 3.1e-21 105.9 169 45.6
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.1e-21 105.5 168 47.6
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 9.1e-21 104.4 172 40.7
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 1.5e-20 103.6 173 43.4
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 3.4e-20 102.4 172 42.4
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 4.5e-20 102.1 170 42.4
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 1.3e-19 100.5 192 39.6
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.7e-19 100.1 170 38.8
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.7e-19 100.1 187 43.3
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.9e-19 99.4 167 38.9
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 3.8e-19 99.0 170 41.2
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.8e-19 99.0 166 38.6
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 5.0e-19 98.6 206 39.3
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 3.2e-18 95.9 167 44.3
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 9.4e-18 94.4 157 39.5
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.6e-17 93.6 172 40.1
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.6e-17 93.6 176 40.9
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 1.6e-17 93.6 170 38.2
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 2.1e-17 93.2 157 43.3
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 4.7e-17 92.0 173 41.0
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 6.1e-17 91.7 176 36.9
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 1.4e-16 90.5 172 41.3
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.0e-16 89.4 163 38.0
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 6.7e-16 88.2 143 41.3
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 8.8e-16 87.8 175 40.0
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.1e-15 87.4 175 40.0
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 1.1e-15 87.4 173 38.7
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.1e-15 87.4 167 40.7
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.5e-15 87.0 174 41.4
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 4.4e-15 85.5 131 47.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.7e-15 85.1 159 39.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.7e-14 83.6 150 39.3
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 3.7e-14 82.4 172 36.6
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 1.1e-13 80.9 190 33.2
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 1.1e-13 80.9 157 35.0
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.0e-12 76.6 173 38.2
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 6.5e-11 71.6 171 35.1
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 1.1e-10 70.9 145 37.9
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-09 67.4 155 35.5
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 2.3e-08 63.2 169 33.7
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 2.3e-08 63.2 146 33.6
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 6.7e-08 61.6 173 32.9
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 6.7e-08 61.6 173 32.4


User provided reference genes

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