Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 5.3e-193 677.6 354 100.0
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.4e-177 626.3 354 87.3
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.2e-170 602.4 354 83.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 3.2e-161 572.0 350 80.3
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 5.6e-150 534.6 354 74.6
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 4.1e-145 518.5 360 71.1
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 3.9e-143 511.9 363 69.7
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.1e-140 503.8 361 69.3
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.4e-140 502.7 357 71.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.6e-133 479.9 365 64.1
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 5.2e-132 474.9 365 63.8
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 7.6e-131 471.1 293 76.1
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.5e-123 446.8 354 62.4
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 2.6e-123 446.0 354 61.3
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 9.3e-121 437.6 354 59.3
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.0e-120 434.9 354 61.0
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 7.9e-120 434.5 354 60.5
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 7.9e-120 434.5 354 60.7
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 7.9e-120 434.5 353 60.1
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.3e-119 433.7 354 59.3
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 3.9e-119 432.2 352 59.7
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 6.7e-119 431.4 354 59.6
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 1.1e-118 430.6 352 58.5
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.1e-118 430.6 352 58.5
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.5e-118 429.5 354 59.3
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.3e-117 427.2 337 61.7
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.6e-117 426.8 354 58.8
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.1e-117 424.5 354 57.9
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.4e-116 423.7 354 58.5
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.8e-116 423.3 354 58.5
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 4.0e-116 422.2 354 59.0
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 5.3e-116 421.8 354 58.2
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 9.0e-116 421.0 352 60.2
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.5e-115 420.2 352 59.4
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 3.4e-115 419.1 354 58.5
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.8e-115 418.3 352 59.1
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 7.6e-115 417.9 352 57.7
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.3e-114 417.2 352 59.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 3.2e-113 412.5 354 57.1
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.2e-112 410.6 354 55.9
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 4.6e-112 408.7 347 56.5
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 4.6e-112 408.7 355 55.2
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 4.6e-112 408.7 354 56.8
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 7.9e-112 407.9 353 55.8
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.8e-111 406.8 354 55.9
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.9e-110 403.3 356 57.3
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 3.7e-109 399.1 354 55.9
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 3.7e-109 399.1 341 56.9
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 6.2e-109 398.3 356 55.9
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 8.2e-109 397.9 340 57.9
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.4e-108 396.4 354 54.5
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 2.6e-107 392.9 327 58.7
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 4.5e-107 392.1 297 61.3
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 7.6e-107 391.3 354 55.1
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.0e-106 391.0 340 57.4
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.7e-106 390.2 293 63.1
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 4.2e-105 385.6 355 54.6
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.5e-105 385.2 340 55.6
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.1e-105 384.8 340 53.8
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 4.6e-104 382.1 331 56.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.0e-103 380.9 328 56.4
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 2.3e-103 379.8 326 56.4
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.0e-103 379.4 354 55.1
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 3.9e-103 379.0 288 62.8
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 3.9e-103 379.0 341 54.5
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 6.7e-103 378.3 353 53.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 6.7e-103 378.3 341 54.5
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.8e-101 372.9 332 53.3
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.1e-100 370.9 281 60.9
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.1e-100 370.9 355 53.0
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 1.5e-99 367.1 299 57.9
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 2.0e-99 366.7 346 52.9
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.3e-98 364.0 333 54.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.7e-98 363.6 333 54.4
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 3.2e-97 359.4 355 51.3
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 9.4e-97 357.8 346 51.2
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 2.1e-96 356.7 343 50.7
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.0e-95 352.8 354 51.1
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 6.7e-95 351.7 354 50.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.1e-94 350.9 333 50.8
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.5e-94 349.7 295 55.9
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.8e-93 346.3 354 50.3
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.7e-93 345.9 356 48.6
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 2.4e-92 343.2 355 51.0
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 3.1e-92 342.8 354 49.4
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 3.4e-91 339.3 354 48.9
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.0e-90 337.8 354 48.9
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.0e-90 337.8 355 50.1
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.0e-90 337.8 355 50.1
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.8e-90 335.9 356 48.9
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 3.8e-90 335.9 296 54.1
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.8e-90 335.9 343 48.1
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 5.5e-89 332.0 288 56.6
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 4.1e-84 315.8 297 51.9
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 5.3e-84 315.5 337 49.9
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 7.0e-84 315.1 354 44.9
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.7e-82 310.5 283 52.7
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 2.2e-82 310.1 331 46.8
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.2e-81 306.2 355 43.4
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 4.7e-80 302.4 285 49.5
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.7e-79 298.5 339 47.2
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 8.8e-79 298.1 250 58.8
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.4e-78 295.8 326 44.5
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 8.5e-74 281.6 255 56.1
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.1e-68 263.1 220 56.8
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.5e-67 259.6 297 43.8
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 7.2e-65 251.9 328 40.5
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.2e-62 244.6 285 42.8
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 8.3e-61 238.4 291 41.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 5.4e-60 235.7 296 41.9
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 2.0e-59 233.8 293 39.6
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 5.5e-57 225.7 332 38.3
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 5.2e-55 219.2 299 41.5
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.3e-50 203.8 156 59.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-46 191.4 312 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-45 187.6 291 34.7
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-44 183.3 288 35.8
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.5e-43 179.9 285 34.0
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.0e-42 176.8 154 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 173.7 341 32.3
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-41 173.3 287 33.1
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.3e-41 172.2 237 39.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.0e-40 168.7 288 34.7
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 8.0e-40 168.7 284 33.1
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-39 167.2 314 29.3
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-39 166.8 242 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-37 160.6 293 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-36 157.1 296 34.1
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.4e-36 156.0 297 32.0
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.0e-36 155.6 291 32.3
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-34 151.4 297 32.0
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 9.5e-33 145.2 194 37.6
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-31 141.4 289 31.8
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.8e-31 139.0 289 31.5
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-28 131.7 306 30.1
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.9e-28 131.0 324 29.9
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-23 114.4 270 29.3
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-17 94.4 111 37.8
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.6e-14 82.4 74 45.9
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 1.7e-10 71.2 45 60.0
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.5e-06 58.2 152 30.9


User provided reference genes

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