Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.7e-262 908.7 435 100.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.3e-246 855.1 435 93.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.6e-242 841.6 435 92.4
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.9e-233 811.6 435 89.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 8.5e-233 810.1 435 88.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.1e-227 793.1 435 85.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.0e-226 788.9 461 82.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.0e-222 776.5 435 84.8
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.0e-211 737.3 428 79.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 7.0e-211 737.3 428 79.7
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 3.5e-210 734.9 427 80.3
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 4.5e-210 734.6 428 80.4
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 5.9e-210 734.2 430 79.3
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.2e-209 732.3 430 80.2
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.8e-209 731.5 432 79.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.5e-208 728.8 430 80.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.7e-207 725.3 427 80.1
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.7e-207 725.3 434 79.5
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.7e-207 724.5 428 79.7
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 8.0e-207 723.8 444 77.9
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-206 723.0 428 79.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.8e-206 722.6 427 79.2
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.0e-206 721.8 427 79.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.7e-206 720.7 428 79.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 8.8e-206 720.3 434 76.7
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.2e-205 719.9 428 78.3
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.6e-205 718.8 430 77.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.6e-205 718.8 430 77.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.6e-205 718.8 430 78.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.6e-205 718.8 437 77.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.3e-205 718.4 428 78.5
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.7e-205 717.6 430 78.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 8.2e-204 713.8 430 78.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.4e-203 713.0 429 78.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-203 713.0 437 76.7
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.1e-203 711.4 430 77.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 7.0e-203 710.7 428 76.9
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.7e-202 708.8 431 77.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-200 703.4 425 78.1
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.5e-200 702.2 443 75.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.7e-199 698.7 429 77.4
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.7e-199 698.7 424 75.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.1e-199 697.6 426 77.5
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.0e-198 696.8 427 75.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 4.0e-198 694.9 422 78.0
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.2e-197 693.3 427 75.4
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.0e-197 692.6 430 76.5
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 4.4e-197 691.4 427 75.6
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.1e-195 685.3 430 75.1
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-194 683.3 443 74.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 2.0e-194 682.6 430 73.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-193 679.1 426 76.1
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 8.6e-193 677.2 427 74.2
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.5e-192 676.4 427 73.8
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.5e-192 675.6 446 73.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.3e-192 675.2 444 73.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.3e-192 675.2 437 74.1
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.0e-191 670.6 447 72.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-190 669.8 441 73.0
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 3.0e-190 668.7 428 73.1
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.0e-190 668.3 407 77.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 6.8e-190 667.5 428 74.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.5e-189 666.4 437 73.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.4e-187 659.1 427 72.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.7e-186 655.6 430 71.6
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 4.5e-186 654.8 407 75.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.7e-185 652.9 409 75.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 8.6e-185 650.6 422 72.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.5e-184 649.8 428 71.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.9e-184 649.4 422 73.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-183 646.7 367 81.5
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.1e-183 644.4 430 71.2
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.8e-182 642.9 433 67.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.2e-182 641.3 434 68.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.6e-181 639.0 433 72.1
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.4e-181 638.6 431 70.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.4e-181 638.6 433 67.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.3e-180 636.7 437 67.7
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.3e-180 636.7 443 67.3
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.7e-180 636.3 434 68.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.2e-180 636.0 437 67.5
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.9e-180 634.8 434 67.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.9e-180 634.8 438 67.1
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.9e-180 634.8 427 70.3
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.1e-179 631.7 440 67.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.1e-179 631.7 440 67.0
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 5.4e-179 631.3 459 68.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 7.0e-179 630.9 432 70.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 7.8e-178 627.5 436 66.5
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.7e-177 626.3 433 67.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.9e-177 625.2 437 68.9
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.6e-175 618.6 438 68.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 8.0e-175 617.5 472 64.8
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-174 616.3 434 66.6
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 5.8e-173 611.3 452 64.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 5.8e-173 611.3 437 68.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.7e-172 608.6 432 67.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 6.0e-170 601.3 443 63.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.0e-170 601.3 435 68.0
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.5e-168 596.7 436 63.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.3e-168 595.5 341 80.6
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 8.1e-167 590.9 357 77.9
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.9e-164 582.4 365 74.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.9e-163 579.7 381 74.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 3.2e-163 578.9 290 96.9
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-162 577.0 404 67.6
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 6.6e-161 571.2 465 59.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.1e-159 566.2 398 66.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.7e-159 565.1 401 69.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.3e-156 557.0 431 59.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.7e-156 556.6 510 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.0e-153 547.4 441 59.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.5e-152 543.5 446 61.2
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.8e-151 539.3 442 55.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.1e-150 537.3 443 55.5
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 9.0e-150 534.3 435 62.1
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.1e-147 524.6 321 77.3
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.5e-146 522.3 391 65.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 8.7e-137 491.1 472 54.9
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.0e-125 453.4 428 57.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.7e-124 450.3 459 52.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.6e-122 443.7 290 72.1
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.5e-122 442.6 347 60.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 8.7e-121 438.0 347 59.4
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.7e-113 411.8 434 53.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.2e-111 406.8 303 66.7
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 4.1e-110 402.5 264 73.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.3e-105 386.7 374 47.9
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.0e-90 335.1 400 42.5
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-89 334.7 175 92.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.8e-89 332.0 421 41.8
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.0e-88 330.5 282 61.0
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.8e-86 323.9 185 79.5
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-85 321.2 214 72.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-66 257.7 218 67.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.6e-53 214.5 119 80.7
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.0e-53 212.6 195 54.9
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 6.2e-50 202.6 183 58.5
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.9e-47 193.0 157 61.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.6e-43 179.5 241 46.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-42 178.3 239 46.0
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-42 177.6 94 90.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 8.1e-42 175.6 205 47.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.6e-37 161.4 248 40.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 8.7e-36 155.6 109 67.9
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.5e-35 154.8 86 84.9
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-30 136.7 239 39.3
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 6.2e-26 122.9 70 85.7
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-22 111.7 85 64.7
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-21 108.6 62 77.4
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.5e-19 100.9 71 63.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 3.7e-18 97.1 136 39.0
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-11 74.3 80 50.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-09 67.8 36 83.3
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.6e-08 64.3 61 59.0
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.9e-07 60.8 43 62.8


User provided reference genes

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