Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 9.6e-100 367.1 221 100.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.7e-96 356.3 221 91.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.4e-90 336.7 217 88.5
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 3.1e-90 335.5 221 78.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 9.0e-90 334.0 221 78.3
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 9.0e-90 334.0 217 87.6
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.2e-89 333.6 221 86.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.2e-89 333.6 221 78.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 5.9e-89 331.3 221 84.2
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 8.4e-88 327.4 221 76.5
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.4e-87 326.6 216 86.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 7.2e-87 324.3 222 80.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 2.1e-86 322.8 221 83.3
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.7e-80 303.1 221 78.7
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 9.4e-79 297.4 221 70.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.1e-78 296.2 221 69.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 2.7e-78 295.8 221 69.7
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.6e-78 295.0 221 69.7
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.0e-77 293.9 221 69.7
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.0e-77 293.9 221 69.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.8e-77 293.1 219 69.9
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.9e-77 292.0 219 73.1
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 6.7e-77 291.2 220 68.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.1e-76 290.4 220 68.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 1.5e-76 290.0 219 70.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 3.3e-76 288.9 219 68.9
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 4.3e-76 288.5 221 76.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 5.7e-76 288.1 221 76.0
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 5.3e-74 281.6 219 66.7
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 6.9e-74 281.2 221 67.4
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.9e-74 281.2 218 74.3
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 7.7e-73 277.7 219 76.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.2e-72 276.2 220 64.5
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 3.8e-72 275.4 218 74.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.5e-72 274.6 219 63.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 6.5e-72 274.6 221 65.2
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.1e-71 273.9 219 75.8
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.1e-71 273.9 221 65.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.4e-71 273.5 216 65.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.9e-71 273.1 216 75.5
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.9e-71 273.1 212 69.3
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 2.5e-71 272.7 220 63.6
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 5.5e-71 271.6 213 75.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 5.5e-71 271.6 219 73.1
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.6e-70 270.0 220 66.8
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 4.7e-70 268.5 213 75.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 4.7e-70 268.5 213 75.6
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 4.7e-70 268.5 216 65.7
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 6.1e-70 268.1 217 72.4
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.0e-69 267.3 219 64.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.0e-69 267.3 221 62.9
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.3e-69 266.2 218 70.6
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 3.0e-69 265.8 221 63.3
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 5.2e-69 265.0 213 75.1
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.5e-68 263.5 213 63.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.5e-68 263.5 218 70.6
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 2.0e-68 263.1 213 74.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.0e-68 263.1 218 70.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 2.6e-68 262.7 210 65.2
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 2.6e-68 262.7 213 74.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.3e-68 262.3 211 74.9
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.3e-68 262.3 211 73.9
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 3.3e-68 262.3 211 74.9
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 3.3e-68 262.3 216 63.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 7.4e-68 261.2 221 62.4
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 7.4e-68 261.2 217 73.7
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 9.7e-68 260.8 217 63.6
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 9.7e-68 260.8 213 73.7
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.7e-67 260.0 211 73.0
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.7e-67 260.0 211 73.5
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 2.2e-67 259.6 210 72.9
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 3.7e-67 258.8 211 73.9
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 3.7e-67 258.8 216 63.0
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 3.7e-67 258.8 216 63.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 4.8e-67 258.5 210 74.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 8.2e-67 257.7 216 69.4
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 8.2e-67 257.7 211 73.5
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 8.2e-67 257.7 211 73.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.1e-66 257.3 214 62.6
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.8e-66 256.5 201 66.2
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.8e-66 256.5 221 60.6
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 9.1e-66 254.2 214 61.2
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 2.0e-65 253.1 208 63.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.0e-64 250.8 208 63.5
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.0e-64 250.8 208 62.5
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 5.0e-64 248.4 211 71.6
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 5.0e-64 248.4 211 71.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 4.2e-63 245.4 223 59.6
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.4e-61 240.4 210 68.1
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.4e-61 240.4 216 60.6
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.8e-61 240.0 214 60.3
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.1e-60 237.3 216 58.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 7.0e-58 228.0 205 66.3
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.5e-55 220.3 231 53.2
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 9.4e-55 217.6 171 66.7
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.4e-52 209.1 217 52.5
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 7.5e-52 208.0 208 51.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.3e-51 204.9 221 52.9
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.2e-49 200.7 167 62.9
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.6e-49 200.3 174 60.3
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.3e-45 186.4 214 49.1
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 6.8e-45 184.9 144 66.7
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 3.5e-41 172.6 224 46.9
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 4.5e-41 172.2 217 45.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 9.5e-39 164.5 204 44.1
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 6.1e-38 161.8 152 53.9
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 2.0e-36 156.8 115 67.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.4e-34 149.8 103 68.9
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.6e-30 137.1 207 37.2
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.0e-29 134.4 204 36.3
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-29 132.1 202 39.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.4e-27 125.2 167 44.3
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.3e-24 117.5 217 36.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.9e-19 99.0 58 86.2
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 1.2e-09 67.8 51 74.5
arahy.Tifrunner.gnm1.ann1.TG1S5P Arachis hypogaea HOM05D000056 ORTHO05D000019 3.6e-06 56.2 27 96.3


User provided reference genes

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