Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 6.6e-266 920.2 491 100.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 5.2e-263 910.6 491 99.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 7.3e-257 890.2 491 96.5
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 4.7e-248 860.9 474 97.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.6e-240 835.9 490 90.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.6e-240 834.7 490 90.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 8.1e-240 833.6 492 90.9
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.2e-238 829.7 493 89.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.9e-237 825.1 493 88.6
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-234 815.5 489 88.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.0e-234 815.1 489 88.5
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 5.8e-230 800.8 491 87.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.9e-226 788.1 489 86.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 7.3e-217 757.3 490 82.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 7.3e-217 757.3 490 82.7
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.8e-215 752.7 497 81.7
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.9e-212 742.7 502 81.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 3.2e-212 741.9 494 81.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 3.0e-210 735.3 498 79.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.0e-210 735.3 489 80.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-209 733.4 498 79.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.9e-209 732.6 499 79.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.6e-209 731.1 493 79.9
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.2e-208 727.6 493 80.3
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.1e-207 726.9 476 82.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.1e-207 725.3 498 79.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.0e-207 724.9 489 80.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.2e-206 723.4 496 77.8
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.6e-206 722.2 489 80.4
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.3e-205 719.9 494 79.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-205 719.5 474 82.5
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.8e-205 718.4 489 80.0
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.9e-204 716.1 502 77.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.2e-204 715.3 477 80.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.2e-203 713.4 494 78.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-203 712.6 516 75.2
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 4.6e-203 711.4 488 78.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.3e-202 709.1 489 78.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.3e-202 709.1 494 79.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-201 706.4 526 73.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.5e-201 705.7 496 76.2
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 4.3e-201 704.9 491 77.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.7e-200 701.8 488 77.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 8.2e-200 700.7 466 81.1
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.1e-199 700.3 496 77.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-198 696.8 496 76.8
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-198 695.7 505 75.0
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-196 690.3 514 76.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.4e-196 689.9 498 76.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.1e-195 686.0 497 75.3
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.7e-195 685.6 498 76.1
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.0e-194 683.7 497 76.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.7e-194 680.6 495 75.6
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.9e-193 679.5 491 73.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.3e-193 678.3 493 73.6
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.6e-190 669.1 497 74.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.6e-190 669.1 486 76.1
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 4.5e-190 668.3 497 74.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.0e-189 667.2 495 74.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.2e-189 666.0 505 73.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 6.5e-189 664.5 492 74.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.5e-188 662.5 493 71.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.5e-188 662.5 497 73.8
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 2.5e-188 662.5 502 72.1
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.2e-188 662.1 455 78.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.2e-187 660.2 488 73.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.9e-186 655.2 491 73.7
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.3e-185 652.1 497 72.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.7e-185 651.4 498 75.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.8e-183 646.4 499 71.3
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 9.1e-183 644.0 508 69.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.9e-182 641.3 500 70.8
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 5.9e-182 641.3 441 77.3
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.0e-181 640.6 489 70.8
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-181 639.8 499 69.7
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.2e-181 639.4 500 70.4
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 6.5e-181 637.9 500 70.0
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 6.5e-181 637.9 483 71.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 8.5e-181 637.5 500 69.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.9e-180 636.3 510 70.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.2e-180 635.6 498 70.7
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 4.2e-180 635.2 503 69.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.2e-180 634.4 484 72.1
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.1e-179 632.9 500 69.4
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.6e-177 625.9 497 68.8
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.3e-176 623.6 509 67.8
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-176 621.7 518 68.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 8.2e-176 620.9 497 68.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.1e-175 619.0 499 68.3
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.5e-174 615.5 494 68.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.3e-173 613.6 409 82.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.8e-173 612.1 496 68.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.5e-172 609.4 491 69.2
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.5e-172 609.4 489 68.1
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 3.2e-172 609.0 494 67.8
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.0e-170 602.4 499 67.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.3e-169 599.0 442 76.5
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.4e-169 597.8 493 65.9
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.2e-168 596.3 497 64.8
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 3.7e-168 595.5 500 67.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.2e-165 586.3 502 64.7
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 8.5e-165 584.3 498 65.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.0e-157 560.8 375 80.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-155 553.9 356 83.1
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.2e-154 548.5 533 61.5
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.2e-148 528.1 475 63.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 6.8e-146 521.5 474 60.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.0e-145 520.0 474 61.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.8e-139 499.6 486 58.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 3.4e-137 492.7 485 60.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.4e-136 488.4 498 59.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.0e-129 466.8 375 72.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.2e-127 458.0 443 60.7
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.1e-124 451.1 404 62.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.3e-124 449.1 388 68.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.6e-123 446.0 378 63.0
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.9e-116 423.7 482 56.2
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 4.8e-107 392.5 379 62.0
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 4.8e-107 392.5 379 62.0
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 9.0e-98 361.7 202 90.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.6e-94 350.9 253 79.1
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 3.9e-93 346.3 424 50.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 9.6e-92 341.7 369 53.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 7.1e-87 325.5 324 54.3
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.9e-84 317.4 443 46.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-83 313.2 215 78.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.5e-80 302.4 220 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.7e-78 297.0 404 42.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.3e-59 235.0 202 66.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.1e-58 230.3 268 54.5
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.7e-57 225.7 405 37.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.5e-55 220.7 395 37.7
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-51 206.8 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.0e-49 201.1 339 37.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.2e-43 181.0 132 72.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 5.0e-40 169.9 286 44.1
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.2e-39 166.8 92 90.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.4e-36 157.1 86 89.5
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-35 155.2 93 73.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.6e-28 131.0 87 77.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.3e-24 118.6 144 53.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.5e-23 114.4 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.0e-21 109.0 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.2e-18 95.9 92 54.3
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.3e-16 92.0 66 74.2
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.4e-12 77.4 71 63.4
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.3e-11 72.8 62 59.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.3e-11 72.8 62 59.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.8e-09 66.2 62 54.8
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 7.8e-09 66.2 65 60.0


User provided reference genes

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