Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.3e-88 329.7 167 100.0
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.5e-36 156.8 236 45.8
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.1e-34 150.6 118 69.5
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.8e-34 149.8 119 68.9
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.8e-34 149.8 136 62.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.4e-34 149.4 218 48.2
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.4e-34 149.4 136 64.0
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 9.1e-34 147.5 225 46.7
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 9.1e-34 147.5 229 45.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-33 147.1 136 61.8
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 4.5e-33 145.2 225 46.7
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 5.9e-33 144.8 225 46.2
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.9e-33 144.8 231 45.0
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.0e-32 144.1 116 69.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.9e-32 142.5 78 87.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.5e-32 141.4 136 61.8
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.2e-31 138.7 224 43.8
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.6e-30 136.7 223 43.0
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.6e-30 135.6 114 65.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.8e-29 133.3 78 83.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 6.7e-29 131.3 203 47.3
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.4e-26 122.9 218 40.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 4.5e-25 118.6 219 40.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.3e-24 117.1 116 58.6
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.2e-24 116.3 162 46.3
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.4e-23 113.6 116 56.9
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.4e-23 113.6 230 36.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.5e-23 112.8 133 53.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.2e-23 112.5 116 56.9
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.5e-23 111.7 228 37.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 7.2e-23 111.3 134 52.2
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 9.4e-23 110.9 223 37.2
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.2e-22 110.5 228 37.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.6e-22 110.2 220 39.5
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.6e-22 110.2 116 56.0
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-22 110.2 225 39.6
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.6e-22 110.2 116 55.2
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.6e-22 109.0 220 38.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.6e-22 109.0 116 55.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.6e-22 109.0 217 38.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.7e-22 108.6 220 39.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.1e-22 108.2 116 54.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.1e-22 108.2 116 54.3
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.0e-21 107.5 220 38.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.0e-21 107.5 116 54.3
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.0e-21 107.5 116 55.2
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-21 107.1 117 51.3
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.8e-21 106.7 142 47.9
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.8e-21 106.7 116 53.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.8e-21 106.7 116 55.2
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.8e-21 106.7 218 37.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.3e-21 106.3 116 55.2
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.3e-21 106.3 116 54.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.3e-21 106.3 116 54.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.3e-21 106.3 117 53.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.3e-21 106.3 117 52.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.0e-21 105.9 123 52.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.0e-21 105.9 116 50.9
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.0e-21 105.9 116 54.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 3.9e-21 105.5 115 53.9
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.9e-21 105.5 117 53.8
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.9e-21 105.5 228 36.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.9e-21 105.5 134 48.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.9e-21 105.5 116 53.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.2e-21 105.1 133 48.1
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 5.2e-21 105.1 136 48.5
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.2e-21 105.1 115 53.0
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.7e-21 104.8 116 53.4
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 6.7e-21 104.8 115 52.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.7e-21 104.8 115 54.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 8.8e-21 104.4 116 52.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 8.8e-21 104.4 134 50.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.1e-20 104.0 134 47.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-20 104.0 116 52.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.5e-20 103.6 134 47.8
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.5e-20 103.6 123 51.2
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.0e-20 103.2 115 53.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.0e-20 103.2 116 51.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.0e-20 103.2 134 47.0
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-20 102.8 119 52.1
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-20 102.8 119 52.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.3e-20 102.4 134 49.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 4.4e-20 102.1 123 49.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 5.7e-20 101.7 116 51.7
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 7.4e-20 101.3 134 47.8
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 7.4e-20 101.3 136 45.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 9.7e-20 100.9 116 51.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 9.7e-20 100.9 116 51.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 9.7e-20 100.9 116 51.7
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.7e-20 100.9 136 46.3
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 9.7e-20 100.9 136 46.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 9.7e-20 100.9 116 51.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.3e-19 100.5 116 51.7
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-19 100.5 117 53.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.2e-19 99.8 116 50.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.2e-19 99.8 119 49.6
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-19 99.4 136 44.9
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-19 99.4 136 45.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.8e-19 99.4 133 46.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.7e-19 99.0 135 48.9
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 3.7e-19 99.0 114 51.8
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.7e-19 99.0 134 47.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.8e-19 98.6 116 52.6
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 4.8e-19 98.6 116 50.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 4.8e-19 98.6 117 49.6
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 4.8e-19 98.6 119 48.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.3e-19 98.2 134 47.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-18 97.4 114 51.8
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-18 97.4 173 38.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-18 97.4 119 48.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.4e-18 97.1 110 51.8
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.8e-18 96.7 117 51.3
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.8e-18 96.7 170 39.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.4e-18 96.3 133 46.6
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.1e-18 95.5 114 51.8
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 5.3e-18 95.1 116 49.1
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 2.0e-17 93.2 119 44.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.5e-17 92.0 116 48.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 7.7e-17 91.3 136 44.9
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 7.7e-17 91.3 54 81.5
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.3e-16 90.5 115 47.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.2e-16 89.7 116 44.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.8e-16 89.0 119 47.1
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 6.5e-16 88.2 74 60.8
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 8.5e-16 87.8 118 50.0
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.1e-15 87.4 116 43.1
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.9e-15 86.7 114 45.6
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 9.4e-15 84.3 116 39.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-14 84.0 222 34.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 3.6e-14 82.4 134 43.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.1e-14 81.6 102 47.1
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.0e-14 81.3 56 67.9
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.0e-13 79.3 51 72.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 6.7e-13 78.2 53 71.7
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 8.8e-13 77.8 62 64.5
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.2e-12 77.4 50 72.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.5e-12 77.0 116 39.7
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 3.3e-12 75.9 74 56.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.4e-12 75.5 115 40.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.7e-12 75.1 75 49.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 9.7e-12 74.3 50 70.0
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 9.7e-12 74.3 50 70.0
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.8e-11 72.8 63 61.9
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-09 66.2 150 35.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 3.5e-09 65.9 169 35.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.3e-08 63.9 47 63.8
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.2e-08 63.2 74 41.9
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.0e-08 62.0 94 33.0
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.5e-07 59.7 116 36.2


User provided reference genes

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