Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.6e-55 219.2 108 100.0
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.3e-45 184.5 108 90.7
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.4e-43 179.5 108 88.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.1e-43 178.3 108 88.0
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.4e-40 169.5 108 80.6
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.5e-40 167.5 110 80.9
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.5e-40 167.5 110 80.9
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 7.6e-34 147.1 116 71.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.7e-33 146.0 109 72.5
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 5.5e-32 141.0 113 69.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 4.6e-31 137.9 112 69.6
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.6e-31 137.9 113 68.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.5e-29 132.9 109 66.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 5.7e-29 131.0 115 67.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.8e-28 127.9 111 61.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.8e-27 125.9 109 64.2
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.4e-27 125.6 116 63.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 58.0
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.9e-25 118.6 112 56.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.8e-25 118.2 112 58.0
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.5e-24 114.4 112 55.4
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.2e-23 113.2 112 51.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.2e-23 113.2 112 51.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.2e-23 113.2 112 51.8
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.7e-23 112.1 116 55.2
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.7e-23 112.1 101 66.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 6.1e-23 110.9 114 52.6
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.0e-22 110.2 115 53.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.1e-22 107.8 109 55.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.5e-21 106.3 111 52.3
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-21 105.9 111 55.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-21 105.9 111 55.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.6e-21 105.5 115 53.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 4.4e-21 104.8 125 48.8
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 4.4e-21 104.8 115 50.4
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.4e-21 104.8 115 53.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.4e-21 104.8 111 50.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 5.7e-21 104.4 116 53.4
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.7e-21 103.6 116 55.2
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.7e-21 103.6 116 55.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 57.7
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 55.9
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.7e-20 101.7 113 53.1
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.8e-20 101.3 111 49.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.8e-20 101.3 109 50.5
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.2e-20 100.5 113 53.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-19 100.1 109 49.5
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-19 100.1 109 49.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-19 100.1 109 49.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-19 99.4 113 52.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.4e-19 99.0 111 50.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.4e-19 99.0 112 56.2
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.1e-19 98.2 113 52.2
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.1e-19 98.2 108 47.2
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 4.1e-19 98.2 112 50.9
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 5.3e-19 97.8 111 48.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-18 96.7 113 50.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-18 96.3 116 50.9
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.5e-18 96.3 113 49.6
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 1.5e-18 96.3 109 55.0
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 109 46.8
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 111 53.2
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 5.9e-18 94.4 111 47.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 5.9e-18 94.4 111 54.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.7e-17 92.8 103 49.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.2e-17 92.4 113 46.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 2.9e-17 92.0 122 49.2
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.9e-17 92.0 108 51.9
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.8e-17 91.7 94 55.3
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 8.5e-17 90.5 112 45.5
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.5e-17 90.5 109 48.6
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.4e-16 89.7 111 44.1
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.9e-16 89.4 109 47.7
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.9e-16 89.4 95 51.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.5e-16 89.0 96 55.2
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.5e-16 89.0 94 51.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.2e-16 88.6 98 50.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.5e-16 87.8 100 51.0
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 7.2e-16 87.4 103 50.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.2e-16 87.4 112 44.6
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.4e-16 87.0 119 46.2
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-15 86.7 119 46.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.2e-15 86.7 113 44.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.6e-15 86.3 114 45.6
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-15 85.1 98 52.0
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.6e-15 85.1 113 43.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.7e-15 84.7 113 42.5
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.1e-15 84.3 68 63.2
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 6.1e-15 84.3 126 45.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.4e-14 83.2 116 45.7
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-14 82.8 106 44.3
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.3e-14 82.4 108 47.2
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.0e-14 82.0 108 46.3
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 3.0e-14 82.0 119 42.9
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 3.0e-14 82.0 100 46.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.2e-14 81.3 109 48.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 5.2e-14 81.3 115 41.7
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.8e-14 80.5 109 42.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.1e-13 80.1 115 41.7
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.0e-13 79.3 88 47.7
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.3e-13 78.6 109 45.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.3e-13 78.6 109 45.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.3e-13 78.6 109 45.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.7e-13 77.8 112 42.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 7.4e-13 77.4 109 40.4
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 7.4e-13 77.4 47 83.0
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 9.7e-13 77.0 104 44.2
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.7e-13 77.0 108 44.4
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 9.7e-13 77.0 109 44.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 9.7e-13 77.0 109 40.4
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.3e-12 76.6 111 44.1
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.3e-12 76.6 113 44.2
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.2e-12 75.9 112 45.5
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.8e-12 75.5 108 42.6
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.7e-12 75.1 80 47.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 4.8e-12 74.7 99 43.4
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 8.2e-12 73.9 108 43.5
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.2e-12 73.9 100 46.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.8e-11 72.8 108 41.7
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.1e-11 72.0 108 42.6
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.1e-11 72.0 108 42.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.1e-11 71.6 112 43.8
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.1e-11 71.6 126 42.9
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 4.1e-11 71.6 82 46.3
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.1e-11 71.6 93 50.5
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.1e-11 70.5 112 42.9
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.6e-10 69.7 108 41.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.0e-10 69.3 108 41.7
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.0e-10 69.3 108 41.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.7e-10 67.4 108 39.8
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.2e-09 65.9 108 40.7
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.9e-09 65.5 108 38.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.5e-09 64.3 99 41.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 8.5e-09 63.9 105 39.0
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 8.5e-09 63.9 103 37.9
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.5e-08 63.2 109 39.4
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.9e-08 62.8 114 38.6
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 7.2e-08 60.8 109 37.6
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.4e-08 60.5 102 40.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 6.1e-07 57.8 99 39.4
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 6.1e-07 57.8 114 36.8
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.3e-06 55.8 94 40.4
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 3.0e-06 55.5 63 44.4
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 6.7e-06 54.3 118 37.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 8.8e-06 53.9 103 35.9


User provided reference genes

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