Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.7e-134 482.6 242 100.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 3.3e-125 451.8 241 93.4
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 4.9e-113 411.4 242 84.3
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-105 386.0 243 79.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-105 386.0 243 79.8
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 7.3e-101 370.9 244 77.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.1e-99 367.1 272 70.6
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 6.8e-99 364.4 244 76.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 5.8e-98 361.3 252 75.4
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.7e-97 359.8 272 69.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 6.0e-95 351.3 244 73.8
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.3e-94 349.4 246 71.1
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 6.2e-92 341.3 258 70.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.1e-91 339.0 253 69.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 4.4e-90 335.1 253 70.4
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 5.8e-90 334.7 260 65.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.3e-89 333.6 203 83.3
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 6.4e-89 331.3 236 70.3
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 6.4e-89 331.3 244 66.4
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 8.4e-89 330.9 262 67.2
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-88 330.5 243 69.1
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-88 330.1 255 65.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.9e-88 329.7 249 67.5
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.9e-88 329.7 243 72.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 3.2e-88 328.9 256 66.4
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.2e-88 328.6 249 67.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 9.3e-88 327.4 257 65.0
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 9.3e-88 327.4 252 65.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.6e-87 326.6 241 71.4
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.0e-86 323.9 242 68.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.0e-86 323.9 244 69.3
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.7e-86 323.2 227 73.6
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.7e-86 323.2 242 68.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.7e-86 323.2 245 66.9
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-86 322.4 242 68.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.9e-86 322.0 256 66.0
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 5.1e-86 321.6 242 64.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.7e-86 320.9 254 65.7
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.5e-85 320.1 251 65.7
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-85 319.7 247 67.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 4.3e-85 318.5 253 65.2
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.6e-85 318.2 250 65.2
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.6e-84 316.6 242 66.1
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.6e-84 316.6 240 65.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.8e-84 315.8 250 63.2
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 3.6e-84 315.5 256 64.8
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 8.1e-84 314.3 251 64.5
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 8.1e-84 314.3 250 65.6
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.1e-83 313.9 242 66.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.8e-83 313.2 241 64.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 4.0e-83 312.0 248 65.3
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 4.0e-83 312.0 254 62.2
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 5.3e-83 311.6 243 65.4
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 5.3e-83 311.6 276 59.1
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 5.3e-83 311.6 283 59.4
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 6.9e-83 311.2 250 64.8
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.2e-82 310.5 241 66.0
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.2e-82 310.5 270 60.4
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.4e-82 308.9 243 65.4
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.4e-82 308.5 241 65.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.8e-82 308.1 251 62.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 5.8e-82 308.1 241 65.1
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.7e-81 306.6 236 66.1
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-81 306.6 200 73.5
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.7e-81 306.6 249 62.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.9e-81 305.8 189 78.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 6.4e-81 304.7 256 61.3
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.4e-81 304.7 270 60.0
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.4e-80 302.8 247 64.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.2e-80 302.0 249 63.9
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.2e-80 302.0 251 63.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.6e-79 300.1 253 62.5
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 4.6e-79 298.5 247 64.8
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 7.9e-79 297.7 238 61.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.0e-78 297.4 245 64.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.3e-78 297.0 239 63.6
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-78 296.6 250 62.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.3e-78 296.2 238 63.0
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.1e-77 293.9 236 64.4
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.5e-77 293.5 236 61.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.9e-77 293.1 242 62.0
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 2.5e-77 292.7 234 62.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 3.3e-77 292.4 237 63.3
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 7.3e-77 291.2 234 62.4
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 7.3e-77 291.2 254 59.4
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 9.6e-77 290.8 242 62.0
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.6e-76 290.0 243 60.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.1e-76 289.7 241 60.6
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.2e-76 288.1 253 58.9
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 6.2e-76 288.1 255 60.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.1e-75 285.8 244 61.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 6.9e-75 284.6 238 61.3
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.9e-75 284.6 253 58.9
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.2e-74 283.9 245 61.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-73 280.0 268 57.8
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.4e-72 276.9 251 58.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.4e-72 276.9 216 68.5
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.4e-72 276.2 209 68.4
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.7e-71 272.7 174 75.3
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.1e-68 263.1 253 54.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.1e-67 260.8 247 57.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.4e-67 260.4 347 45.2
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 2.0e-66 256.5 237 56.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 5.8e-66 255.0 224 58.0
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.9e-64 250.0 201 63.2
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.2e-64 248.8 189 63.5
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 7.1e-64 248.1 234 54.7
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-62 243.0 188 66.0
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-61 240.7 188 65.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 4.3e-61 238.8 170 70.0
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 5.7e-61 238.4 175 72.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-59 233.8 253 54.2
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.6e-58 229.6 248 48.8
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 3.4e-58 229.2 141 75.9
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.0e-57 227.6 173 65.3
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 3.2e-56 222.6 217 58.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 5.5e-56 221.9 200 62.5
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 9.3e-56 221.1 179 65.4
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 7.9e-55 218.0 148 75.0
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.3e-54 217.2 179 56.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.9e-54 215.7 185 60.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.3e-53 212.2 164 64.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.1e-48 197.6 188 56.9
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 9.4e-48 194.5 240 43.8
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.3e-45 185.7 119 79.0
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 1.1e-43 181.0 185 49.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 5.3e-43 178.7 188 53.7
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-42 177.2 154 59.1
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 2.0e-42 176.8 208 49.5
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.7e-41 173.7 156 57.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.6e-39 167.2 170 57.6
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 3.6e-39 166.0 162 56.2
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 6.7e-38 161.8 102 76.5
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.9e-34 148.7 96 74.0
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.6e-31 140.6 183 43.7
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.3e-30 136.7 122 55.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 8.8e-30 134.8 131 52.7
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.1e-27 126.3 114 57.0
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.6e-26 124.0 114 55.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-24 117.5 129 48.8
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.5e-24 117.5 129 48.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.0e-22 111.3 97 55.7
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-22 110.2 67 73.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.4e-21 105.9 76 68.4
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 5.9e-18 95.5 119 52.1
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.3e-17 94.4 68 63.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.8e-17 92.8 64 65.6
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.7e-15 86.7 88 53.4
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-15 86.3 70 60.0
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.7e-15 85.9 105 49.5
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-13 81.3 88 52.3
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.8e-12 76.6 52 65.4
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 7.3e-08 62.0 34 82.4


User provided reference genes

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