Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G260200 Glycine max HOM05D000717 ORTHO05D000555 1.6e-77 292.7 150 100.0
Phvul.008G219200 Phaseolus vulgaris HOM05D000717 ORTHO05D000555 6.9e-09 64.7 40 80.0
VMungo0647G0802 Vigna mungo HOM05D000717 ORTHO05D000555 9.1e-09 64.3 40 80.0
Cpa.g.sc19.101 Carica papaya HOM05D000717 ORTHO05D000555 1.2e-08 63.9 40 75.0
Cpa.g.sc19.102 Carica papaya HOM05D000717 ORTHO05D000555 2.0e-08 63.2 40 75.0
COL.COLO4_25821 Corchorus olitorius HOM05D000717 ORTHO05D000555 2.6e-08 62.8 40 72.5
LjContig00357g0015591 Lotus japonicus HOM05D000717 ORTHO05D000555 2.6e-08 62.8 38 78.9
Ca_06014_v3 Cicer arietinum L. HOM05D000717 ORTHO05D000555 3.4e-08 62.4 43 69.8
Duzib114G0099 Durio zibethinus HOM05D000717 ORTHO05D000555 3.4e-08 62.4 38 76.3
Medtr5g083760 Medicago truncatula HOM05D000717 ORTHO05D000555 3.4e-08 62.4 40 75.0
Glyma.02G260300 Glycine max HOM05D000717 ORTHO05D000555 4.5e-08 62.0 40 77.5
Psat2g029040 Pisum sativum HOM05D000717 ORTHO05D000555 4.5e-08 62.0 36 80.6
PGR142G2965 Punica granatum HOM05D000717 ORTHO05D000555 7.7e-08 61.2 40 72.5
TWI09G0478 Tripterygium wilfordii HOM05D000717 ORTHO05D000555 1.0e-07 60.8 40 75.0
Gohir.A06G159400 Gossypium hirsutum HOM05D000717 ORTHO05D000555 1.3e-07 60.5 40 70.0
Gohir.D06G165300 Gossypium hirsutum HOM05D000717 ORTHO05D000555 1.3e-07 60.5 40 70.0
Gorai.010G192700 Gossypium raimondii HOM05D000717 ORTHO05D000555 1.3e-07 60.5 40 70.0
Prupe.2G259300 Prunus persica HOM05D000717 ORTHO05D000555 1.7e-07 60.1 53 56.6
Rhsim03G0149400 Rhododendron simsii HOM05D000717 ORTHO05D000555 1.7e-07 60.1 38 73.7
TPR.G40074 Trifolium pratense HOM05D000717 ORTHO05D000555 1.7e-07 60.1 40 70.0
Manes.07G137300 Manihot esculenta HOM05D000717 ORTHO05D000555 2.2e-07 59.7 53 60.4
Rhsim09G0183200 Rhododendron simsii HOM05D000717 ORTHO05D000555 2.9e-07 59.3 36 69.4
Cc02_g05760 Coffea canephora HOM05D000717 ORTHO05D000555 3.8e-07 58.9 40 62.5
Lalb_Chr10g0105391 Lupinus albus HOM05D000717 ORTHO05D000555 3.8e-07 58.9 40 72.5
vmacro09983 Vaccinium macrocarpon HOM05D000717 ORTHO05D000555 3.8e-07 58.9 40 62.5
Lalb_Chr17g0347041 Lupinus albus HOM05D000717 ORTHO05D000555 5.0e-07 58.5 40 72.5
PSO017G6824 Papaver somniferum HOM05D000717 ORTHO05D000555 5.0e-07 58.5 40 70.0
QL08p064251 Quercus lobata HOM05D000717 ORTHO05D000555 5.0e-07 58.5 40 67.5
Rhsim09G0182700 Rhododendron simsii HOM05D000717 ORTHO05D000555 5.0e-07 58.5 36 69.4
Lsat_1_v5_gn_9_58660 Lactuca sativa HOM05D000717 ORTHO05D000555 6.5e-07 58.2 36 75.0
Dinv10560 Davidia involucrata HOM05D000717 ORTHO05D000555 8.5e-07 57.8 36 66.7
Hma1.2p1_0292F.1_g115710 Hydrangea macrophylla HOM05D000717 ORTHO05D000555 8.5e-07 57.8 53 49.1
Thecc.10G007500 Theobroma cacao HOM05D000717 ORTHO05D000555 8.5e-07 57.8 40 65.0
Eucgr.G03109 Eucalyptus grandis HOM05D000717 ORTHO05D000555 1.1e-06 57.4 40 67.5
MD01G1161200 Malus domestica HOM05D000717 ORTHO05D000555 1.1e-06 57.4 37 70.3
Nn2g11055 Nelumbo nucifera HOM05D000717 ORTHO05D000555 1.1e-06 57.4 36 75.0
Oeu043147.1 Olea europaea HOM05D000717 ORTHO05D000555 1.1e-06 57.4 36 66.7
RcHm_v2.0_Chr1g0371451 Rosa chinensis HOM05D000717 ORTHO05D000555 1.1e-06 57.4 52 53.8
Cfa001239 Carpinus fangiana HOM05D000717 ORTHO05D000555 1.4e-06 57.0 40 65.0
Haze_17320 Corylus avellana HOM05D000717 ORTHO05D000555 1.4e-06 57.0 40 65.0
Dinv21808 Davidia involucrata HOM05D000717 ORTHO05D000555 1.9e-06 56.6 40 65.0
ECA232G1706 Erigeron canadensis HOM05D000717 ORTHO05D000555 1.9e-06 56.6 40 65.0
Lj1C963T4 Lonicera japonica HOM05D000717 ORTHO05D000555 1.9e-06 56.6 41 61.0
PSO170G0437 Papaver somniferum HOM05D000717 ORTHO05D000555 1.9e-06 56.6 40 65.0
QL08p064236 Quercus lobata HOM05D000717 ORTHO05D000555 1.9e-06 56.6 40 62.5
Sabra10G0139200 Salix brachista HOM05D000717 ORTHO05D000555 1.9e-06 56.6 36 75.0
SalBow5G1013 Salvia bowleyana HOM05D000717 ORTHO05D000555 1.9e-06 56.6 41 56.1
Sc14g0005590 Simmondsia chinensis HOM05D000717 ORTHO05D000555 1.9e-06 56.6 37 75.7
TAR633G2628 Trochodendron aralioides HOM05D000717 ORTHO05D000555 1.9e-06 56.6 36 75.0
Actinidia00985 Actinidia chinensis HOM05D000717 ORTHO05D000555 2.5e-06 56.2 36 63.9
CSS0018988 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 2.5e-06 56.2 40 62.5
HanXRQChr09g0251671 Helianthus annuus HOM05D000717 ORTHO05D000555 2.5e-06 56.2 40 60.0
Manes.07G137200 Manihot esculenta HOM05D000717 ORTHO05D000555 2.5e-06 56.2 40 67.5
SalBow5G4789 Salvia bowleyana HOM05D000717 ORTHO05D000555 2.5e-06 56.2 40 57.5
FAN01G2245 Fragaria x ananassa HOM05D000717 ORTHO05D000555 3.2e-06 55.8 86 40.7
FAN06G0963 Fragaria x ananassa HOM05D000717 ORTHO05D000555 3.2e-06 55.8 86 40.7
FAN10G0218 Fragaria x ananassa HOM05D000717 ORTHO05D000555 3.2e-06 55.8 86 40.7
HanXRQChr09g0251631 Helianthus annuus HOM05D000717 ORTHO05D000555 3.2e-06 55.8 40 62.5
HanXRQChr09g0251641 Helianthus annuus HOM05D000717 ORTHO05D000555 3.2e-06 55.8 40 62.5
PSO017G1817 Papaver somniferum HOM05D000717 ORTHO05D000555 3.2e-06 55.8 50 60.0
PSO541G1566 Papaver somniferum HOM05D000717 ORTHO05D000555 3.2e-06 55.8 40 65.0
PSO781G0263 Papaver somniferum HOM05D000717 ORTHO05D000555 3.2e-06 55.8 40 65.0
Aqoxy4G02173 Aquilegia oxysepala HOM05D000717 ORTHO05D000555 4.2e-06 55.5 36 72.2
CSS0029068 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 4.2e-06 55.5 37 70.3
DCAR_028546 Daucus carota HOM05D000717 ORTHO05D000555 4.2e-06 55.5 40 62.5
Hma1.2p1_1240F.1_g269650 Hydrangea macrophylla HOM05D000717 ORTHO05D000555 4.2e-06 55.5 40 65.0
Peaxi162Scf00284g00135 Petunia axillaris HOM05D000717 ORTHO05D000555 4.2e-06 55.5 36 69.4
vmacro06923 Vaccinium macrocarpon HOM05D000717 ORTHO05D000555 4.2e-06 55.5 56 57.1
GSVIVG01032724001 Vitis vinifera HOM05D000717 ORTHO05D000555 4.2e-06 55.5 37 70.3
arahy.Tifrunner.gnm1.ann1.HL6AU0 Arachis hypogaea HOM05D000717 ORTHO05D000555 5.5e-06 55.1 125 36.0
arahy.Tifrunner.gnm1.ann1.L25L8S Arachis hypogaea HOM05D000717 ORTHO05D000555 5.5e-06 55.1 125 36.0
CANSAT56G0008 Cannabis sativa HOM05D000717 ORTHO05D000555 5.5e-06 55.1 40 65.0
Cpa.g.sc19.100 Carica papaya HOM05D000717 ORTHO05D000555 5.5e-06 55.1 37 70.3
Dinv10559 Davidia involucrata HOM05D000717 ORTHO05D000555 5.5e-06 55.1 40 62.5
Nitab4.5_0000263g0040 Nicotiana tabacum HOM05D000717 ORTHO05D000555 5.5e-06 55.1 36 69.4
Nitab4.5_0000928g0100 Nicotiana tabacum HOM05D000717 ORTHO05D000555 5.5e-06 55.1 36 69.4
arahy.Tifrunner.gnm1.ann1.Y81JPB Arachis hypogaea HOM05D000717 ORTHO05D000555 7.2e-06 54.7 37 67.6
Ca_15178_v3 Cicer arietinum L. HOM05D000717 ORTHO05D000555 7.2e-06 54.7 37 70.3
COL.COLO4_25822 Corchorus olitorius HOM05D000717 ORTHO05D000555 7.2e-06 54.7 37 73.0
Glyma.18G022400 Glycine max HOM05D000717 ORTHO05D000555 7.2e-06 54.7 122 37.7
PSO017G5851 Papaver somniferum HOM05D000717 ORTHO05D000555 7.2e-06 54.7 64 51.6
Psat5g131840 Pisum sativum HOM05D000717 ORTHO05D000555 7.2e-06 54.7 40 65.0
PGSC0003DMG400029154 Solanum tuberosum HOM05D000717 ORTHO05D000555 7.2e-06 54.7 33 72.7
Glyma.11G234600 Glycine max HOM05D000717 ORTHO05D000555 9.4e-06 54.3 122 38.5
Oeu054434.1 Olea europaea HOM05D000717 ORTHO05D000555 9.4e-06 54.3 36 63.9
Psat5g131880 Pisum sativum HOM05D000717 ORTHO05D000555 9.4e-06 54.3 37 70.3
Potri.010G181800 Populus trichocarpa HOM05D000717 ORTHO05D000555 9.4e-06 54.3 36 72.2


User provided reference genes

Program Settings