Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.6e-255 885.6 438 100.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 7.7e-218 760.4 442 87.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.9e-193 678.3 440 77.7
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.2e-186 656.8 427 77.0
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 67.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.9e-168 596.3 441 67.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.8e-164 582.0 451 66.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 7.1e-163 577.8 447 64.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 8.7e-161 570.9 447 65.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.7e-159 565.5 455 61.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 5.3e-158 561.6 450 62.9
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.3e-158 561.6 454 62.8
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.5e-157 560.1 454 62.1
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.2e-156 556.2 450 62.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.8e-156 555.4 449 62.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.9e-155 553.1 452 61.9
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.5e-154 548.9 453 61.4
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.1e-153 545.0 450 61.8
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.9e-141 505.0 427 60.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.5e-139 499.6 439 58.8
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 5.5e-139 498.4 470 54.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.9e-137 492.3 466 54.3
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 5.1e-137 491.9 471 54.6
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.0e-136 490.0 466 53.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.5e-136 489.6 464 53.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.5e-136 489.6 469 54.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.3e-136 489.2 464 53.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 6.9e-134 481.5 463 55.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.1e-134 481.1 465 52.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.6e-133 479.6 466 53.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 4.5e-133 478.8 468 53.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 4.5e-133 478.8 469 53.9
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.3e-132 477.2 468 51.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.0e-132 475.3 467 54.2
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.2e-131 472.2 466 54.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.2e-130 470.7 463 54.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.6e-130 470.3 455 52.3
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.6e-130 469.2 455 52.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.6e-130 469.2 464 52.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.6e-130 469.2 466 51.5
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 6.1e-130 468.4 462 52.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 7.9e-130 468.0 465 52.7
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.8e-129 466.8 463 50.8
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.8e-129 466.8 447 52.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.3e-129 466.5 468 51.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.9e-129 465.7 465 52.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.1e-129 465.3 468 51.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.7e-129 464.9 465 52.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-128 464.2 468 51.5
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-128 463.8 464 52.6
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.6e-128 463.0 463 52.7
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 4.4e-128 462.2 465 51.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.4e-128 462.2 465 52.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.7e-128 461.8 464 50.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 7.4e-128 461.5 468 52.4
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.2e-127 459.9 461 51.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 3.7e-127 459.1 468 51.3
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.7e-127 459.1 464 51.7
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.8e-127 458.8 461 52.5
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.3e-127 458.4 461 51.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.3e-126 455.3 440 52.3
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.0e-126 454.9 469 51.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 9.1e-126 454.5 475 48.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.5e-125 452.6 464 50.4
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.5e-125 452.6 467 50.5
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.9e-125 451.8 444 51.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.9e-125 451.8 444 53.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 2.2e-124 449.9 443 51.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.2e-124 449.9 465 49.7
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.9e-124 449.5 444 51.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.8e-124 449.1 471 50.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 6.5e-124 448.4 444 51.6
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 6.5e-124 448.4 466 50.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.1e-123 447.6 449 51.4
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-123 446.4 438 50.9
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.5e-123 446.4 444 50.9
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.5e-123 445.3 445 51.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.7e-122 443.0 474 50.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.6e-122 442.6 457 51.2
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.6e-122 442.6 467 50.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-121 440.7 438 50.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.7e-121 438.3 444 50.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.8e-121 438.0 448 50.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-120 437.6 459 47.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.5e-120 437.2 471 49.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-120 436.4 439 51.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.3e-120 436.0 438 50.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.4e-120 435.6 467 49.3
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.7e-120 435.3 460 48.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-120 435.3 438 49.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-119 434.1 436 50.0
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-119 434.1 436 50.0
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.7e-119 433.7 439 50.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-119 432.2 439 50.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 4.8e-119 432.2 470 48.1
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.3e-119 431.8 473 47.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 6.3e-119 431.8 453 50.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.1e-118 431.0 472 47.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-118 429.9 442 50.9
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.3e-118 428.7 439 50.3
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.5e-117 426.0 439 50.1
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.5e-117 425.6 439 50.3
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 4.5e-117 425.6 459 47.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 7.7e-117 424.9 465 47.7
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-116 424.1 447 50.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.7e-116 423.7 446 49.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-116 423.7 439 51.7
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-116 423.7 439 51.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.5e-115 418.7 446 49.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 7.2e-115 418.3 439 51.3
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 9.4e-115 417.9 446 49.3
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 9.4e-115 417.9 442 48.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-114 417.2 439 51.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.6e-114 416.0 457 46.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.7e-114 415.6 402 51.2
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 6.1e-114 415.2 472 47.2
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.8e-113 413.7 446 48.9
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.8e-113 413.7 464 49.8
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.0e-113 412.5 447 49.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.5e-112 410.6 461 48.8
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.6e-112 409.8 462 44.8
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 7.5e-112 408.3 469 46.1
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-111 407.5 461 46.6
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.3e-111 405.2 445 47.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.8e-110 403.7 430 48.1
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-110 403.7 455 47.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 5.3e-110 402.1 455 47.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 5.3e-110 402.1 455 47.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.3e-110 402.1 450 46.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.1e-110 401.4 473 44.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-109 401.0 470 46.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-109 400.6 455 47.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.0e-108 395.6 450 45.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-107 394.0 469 47.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.0e-102 375.2 466 43.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-101 374.0 467 43.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.5e-99 364.8 472 41.9
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.0e-97 359.4 380 45.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.2e-93 347.8 454 42.5
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-93 347.1 401 45.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 7.8e-93 345.1 432 43.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.9e-92 343.2 453 41.7
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.2e-90 337.8 425 43.1
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-87 326.6 413 41.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-81 306.2 446 42.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 6.8e-81 305.4 306 51.3
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 6.8e-81 305.4 306 51.3
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.8e-81 305.4 449 36.7
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 9.8e-80 301.6 420 38.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-79 300.4 471 38.0
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-78 297.7 452 36.5
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-78 297.4 470 36.2
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 4.1e-78 296.2 455 38.2
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.3e-75 286.2 441 36.7
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 8.1e-66 255.4 201 63.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.0e-60 236.9 354 37.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.9e-55 220.3 341 40.8
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.1e-50 204.1 203 53.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-50 203.0 192 55.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 6.2e-50 202.6 192 55.2
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-42 177.9 159 56.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.4e-41 174.1 206 45.1
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.7e-36 155.6 160 50.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 4.1e-33 146.7 128 57.8
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.1e-25 120.6 267 33.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 4.6e-21 106.7 285 29.5
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 8.8e-20 102.4 169 39.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.1e-17 93.6 112 46.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.9e-14 84.7 77 54.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.7e-13 80.9 79 54.4


User provided reference genes

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