Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 5.9e-106 387.5 190 100.0
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 2.7e-103 378.6 188 96.8
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 4.0e-102 374.8 188 95.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 7.7e-98 360.5 188 92.0
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 4.7e-95 351.3 190 90.0
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 87.3
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 86.8
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 87.8
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 6.8e-94 347.4 191 88.0
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 8.9e-94 347.1 189 88.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 1.5e-93 346.3 187 88.8
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 88.4
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 3.4e-93 345.1 188 88.3
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 4.4e-93 344.7 187 88.2
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 87.3
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 87.3
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 2.2e-92 342.4 187 88.2
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 2.2e-92 342.4 188 88.3
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 8.3e-92 340.5 187 88.2
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.8e-91 339.3 188 85.6
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.8e-91 339.3 191 85.3
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.8e-91 339.3 188 88.3
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.4e-91 339.0 188 85.6
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.2e-91 338.6 187 87.7
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 86.8
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 85.7
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.1e-91 338.2 188 87.2
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 7.0e-91 337.4 188 86.7
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 9.2e-91 337.0 188 86.7
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 9.2e-91 337.0 189 86.2
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.2e-90 336.7 187 87.2
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 1.6e-90 336.3 189 86.8
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.6e-90 336.3 188 85.1
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.0e-90 335.9 187 87.2
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 3.5e-90 335.1 188 85.1
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.5e-90 335.1 189 85.7
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 3.5e-90 335.1 188 85.6
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 4.6e-90 334.7 190 86.8
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 4.6e-90 334.7 188 84.6
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 4.6e-90 334.7 188 84.6
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 187 83.4
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.0e-89 333.6 188 85.1
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.3
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.7e-89 332.8 188 85.6
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.7e-89 332.8 188 85.6
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.3e-89 332.4 189 84.1
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.9e-89 331.6 188 84.0
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 3.9e-89 331.6 189 84.7
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 3.9e-89 331.6 189 84.7
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 5.0e-89 331.3 188 85.6
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 5.0e-89 331.3 188 85.6
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 5.0e-89 331.3 188 83.5
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 6.6e-89 330.9 189 83.1
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 6.6e-89 330.9 189 85.2
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 6.6e-89 330.9 188 83.0
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 1.5e-88 329.7 188 84.6
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.5e-88 329.7 189 83.1
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.5e-88 328.9 187 81.8
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.5e-88 328.9 190 83.7
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 2.5e-88 328.9 189 83.6
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 7.3e-88 327.4 188 83.5
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.6e-87 326.2 190 84.7
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.1e-87 325.9 190 83.2
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.1e-87 325.9 188 83.5
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 83.1
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 82.0
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 83.6
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 4.7e-87 324.7 188 81.9
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 6.1e-87 324.3 189 82.0
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 6.1e-87 324.3 189 82.0
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.0e-86 323.6 189 81.5
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.0e-86 323.6 189 81.5
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.4e-86 323.2 189 81.5
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.4e-86 323.2 189 81.5
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.4e-86 323.2 188 83.0
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.8e-86 322.8 187 81.8
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.8e-86 322.8 188 83.0
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.3e-86 322.4 190 80.5
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 4.0e-86 321.6 189 82.0
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 5.2e-86 321.2 187 77.0
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 5.2e-86 321.2 189 81.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 5.2e-86 321.2 189 81.5
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 6.8e-86 320.9 187 81.8
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.2e-85 320.1 189 80.4
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.2e-85 320.1 192 79.2
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.2e-85 320.1 188 82.4
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.5e-85 319.7 188 80.9
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 2.0e-85 319.3 188 79.8
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 3.4e-85 318.5 189 79.9
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.4e-85 318.5 188 79.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.4e-85 318.5 189 79.9
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 5.8e-85 317.8 189 81.5
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 5.8e-85 317.8 189 80.4
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 5.8e-85 317.8 188 80.9
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 7.5e-85 317.4 189 79.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 7.5e-85 317.4 188 81.4
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.3e-84 316.6 189 80.4
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 4.9e-84 314.7 189 78.8
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 4.9e-84 314.7 189 79.4
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.9e-83 312.8 187 79.1
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 7.0e-83 310.8 187 78.6
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 7.0e-83 310.8 186 80.1
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 3.5e-82 308.5 188 78.2
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.7e-81 306.2 178 82.6
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.3e-81 305.8 187 80.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.9e-80 302.8 188 77.7
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 8.9e-70 267.3 154 80.5
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.5e-69 266.5 190 64.7
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 4.4e-69 265.0 188 66.0
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 1.7e-68 263.1 158 80.4
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 3.7e-68 261.9 155 81.9
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.0e-65 252.3 188 64.9
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 8.6e-65 250.8 144 86.1
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 5.6e-64 248.1 187 63.6
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.8e-63 245.7 188 64.9
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.4e-62 242.7 149 81.9
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.0e-53 213.0 184 52.7
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 4.4e-53 211.8 151 68.9
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 7.6e-53 211.1 191 55.5
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.6e-53 211.1 184 52.7
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 7.6e-53 211.1 189 52.4
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 3.5e-50 202.2 189 52.9
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.3e-49 200.3 189 50.8
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.2e-47 191.4 184 58.7
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.9e-41 172.2 190 50.5
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 5.1e-41 171.8 191 52.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 6.5e-36 154.8 91 82.4
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 9.3e-35 151.0 91 80.2
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.4e-27 127.1 79 78.5
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 2.3e-25 119.8 184 36.4
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 5.1e-25 118.6 184 35.3
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 2.0e-21 106.7 51 92.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.2e-12 76.6 152 33.6
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 5.7e-08 62.0 28 96.4
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 5.7e-08 62.0 29 86.2


User provided reference genes

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