Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 2.3e-210 735.3 378 100.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 5.5e-204 714.1 378 97.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.0e-190 669.1 378 92.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.2e-174 616.7 372 86.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.3e-173 613.2 362 87.6
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.8e-173 611.7 378 86.2
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 6.5e-173 610.9 372 84.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.9e-172 609.4 406 79.8
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.9e-172 609.4 369 84.8
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.5e-158 562.0 342 81.9
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.5e-158 562.0 350 80.9
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.6e-158 561.6 350 82.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 8.6e-157 557.4 350 81.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.5e-156 555.8 335 83.0
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 3.3e-156 555.4 340 81.8
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.6e-155 553.1 351 80.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 3.1e-154 548.9 350 79.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 5.2e-154 548.1 352 79.3
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 5.2e-154 548.1 338 81.1
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.5e-153 546.6 352 79.3
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.5e-153 546.6 337 82.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.6e-153 545.8 335 81.2
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.5e-153 544.3 340 80.9
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 7.5e-153 544.3 340 80.9
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 9.8e-153 543.9 350 78.9
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.3e-152 543.5 350 80.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.2e-152 542.7 340 80.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.1e-151 540.4 361 77.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 3.2e-151 538.9 350 78.6
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 7.0e-151 537.7 339 82.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.2e-150 537.0 357 76.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.0e-150 536.2 350 80.0
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.0e-150 536.2 365 74.8
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.7e-150 535.8 352 77.6
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 2.7e-150 535.8 365 75.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.5e-150 535.4 338 82.0
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 4.6e-150 535.0 347 79.0
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.7e-149 533.1 403 70.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 5.0e-149 531.6 330 82.1
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 8.6e-149 530.8 313 84.3
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.1e-148 530.4 351 77.5
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.5e-148 529.3 356 77.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.5e-148 529.3 348 77.9
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.3e-148 528.9 361 75.1
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.6e-148 528.1 350 78.0
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 9.5e-148 527.3 350 77.4
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.6e-147 525.4 353 77.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.7e-147 525.0 350 76.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 4.7e-147 525.0 350 77.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 6.2e-147 524.6 352 77.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 8.1e-147 524.2 350 76.9
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.1e-146 523.9 353 76.8
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.8e-146 523.1 353 76.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.8e-146 523.1 353 76.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.8e-146 523.1 330 79.4
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 2.3e-146 522.7 335 79.4
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.1e-146 522.3 353 76.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.1e-146 522.3 329 81.2
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.2e-146 521.5 361 74.2
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 6.8e-146 521.2 338 77.8
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.0e-145 519.6 352 77.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 7.5e-145 517.7 335 77.0
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 7.5e-145 517.7 342 79.2
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.7e-144 516.5 335 77.6
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.7e-144 516.5 338 77.2
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.2e-144 516.2 379 70.7
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.9e-144 515.8 342 78.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.7e-144 515.4 335 77.3
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.9e-144 515.0 317 82.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 6.4e-144 514.6 351 76.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.3e-144 514.2 317 80.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.5e-142 508.8 313 82.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 6.6e-141 504.6 311 80.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.1e-140 503.8 311 81.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.1e-140 503.8 316 80.4
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.6e-139 498.8 311 79.7
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.6e-137 492.7 335 74.0
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 2.2e-136 489.6 338 74.9
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 5.4e-135 485.0 376 70.7
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 7.1e-135 484.6 317 78.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 9.2e-135 484.2 369 67.2
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.1e-134 483.0 305 81.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.6e-134 481.9 351 69.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 6.0e-134 481.5 385 69.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.1e-133 478.4 387 66.7
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 9.6e-132 474.2 357 72.0
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-131 473.4 359 71.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.8e-130 469.9 287 83.6
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.4e-130 469.5 304 79.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 6.9e-130 468.0 307 77.5
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.1e-127 460.7 330 72.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-127 460.7 419 60.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 2.7e-126 456.1 285 79.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 7.8e-126 454.5 315 72.1
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.7e-125 453.4 294 78.6
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.6e-124 447.6 280 80.7
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 2.9e-120 436.0 346 67.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.3e-117 427.2 329 69.3
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.5e-113 413.7 314 66.9
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 7.9e-110 401.4 325 63.1
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 6.7e-109 398.3 334 63.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.1e-108 397.5 242 83.9
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.1e-107 393.3 217 89.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 4.5e-105 385.6 255 75.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 6.3e-99 365.2 221 83.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.2e-88 330.1 305 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.7e-83 312.8 230 68.3
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 6.9e-82 308.5 308 55.2
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.3e-80 304.3 307 53.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 6.5e-80 302.0 190 78.9
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 2.7e-78 296.6 192 77.6
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 3.1e-74 283.1 234 64.1
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.7e-73 278.5 235 62.1
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 9.4e-71 271.6 167 82.6
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.7e-67 260.8 350 47.4
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.6e-60 236.9 151 78.1
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.8e-58 230.7 286 48.3
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.3e-53 213.8 160 68.8
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 9.2e-50 201.8 144 70.8
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.4e-44 183.3 242 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.8e-41 172.2 170 53.5
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 5.6e-39 166.0 123 65.0
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.7e-38 162.9 265 40.4
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.2e-36 158.3 110 68.2
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 5.8e-36 156.0 112 75.9
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.5e-36 155.6 280 34.3
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 4.1e-34 149.8 263 37.3
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 9.2e-34 148.7 243 43.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.5e-33 146.7 101 79.2
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 3.9e-32 143.3 81 92.6
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.1e-29 135.2 88 75.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.4e-21 108.2 108 56.5
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.9e-19 99.8 113 50.4
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.4e-19 99.4 70 72.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.2e-18 95.5 88 61.4
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.2e-18 95.5 54 79.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.8e-17 92.4 56 83.9
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.5e-15 88.2 62 67.7
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.2e-14 85.1 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.1e-10 72.0 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.3e-10 68.9 78 48.7
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.3e-06 58.5 61 54.1


User provided reference genes

Program Settings