Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 3.3e-101 371.7 186 100.0
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 2.8e-84 315.5 188 88.3
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 5.8e-82 307.8 187 82.9
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 7.9e-79 297.4 187 81.3
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 9.4e-64 247.3 187 72.2
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 2.7e-63 245.7 182 72.0
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 4.3e-61 238.4 187 72.2
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 1.1e-56 223.8 183 68.3
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 2.6e-50 202.6 181 61.3
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 5.9e-50 201.4 180 63.9
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 1.4e-48 196.8 185 58.4
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.4e-48 196.8 181 60.2
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 5.5e-48 194.9 131 76.3
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 5.5e-48 194.9 131 76.3
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 8.0e-47 191.0 178 60.7
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 3.7e-44 182.2 186 57.0
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 3.7e-44 182.2 184 57.1
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 6.3e-44 181.4 186 55.4
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 1.1e-43 180.6 187 58.8
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 1.4e-43 180.3 176 58.0
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 1.8e-43 179.9 191 57.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.8e-43 179.9 176 58.0
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 4.1e-43 178.7 176 56.8
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 5.3e-43 178.3 189 56.6
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 7.0e-43 177.9 184 59.8
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 9.1e-43 177.6 185 56.2
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 1.2e-42 177.2 183 56.8
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 1.6e-42 176.8 186 53.8
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 2.6e-42 176.0 183 56.3
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 1.3e-41 173.7 181 55.8
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.2e-41 172.9 176 54.5
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.8e-41 172.2 187 56.7
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 1.1e-40 170.6 188 54.3
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 2.5e-40 169.5 189 54.5
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 3.2e-40 169.1 186 54.3
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 7.2e-40 167.9 182 54.4
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 1.2e-39 167.2 188 53.2
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 1.6e-39 166.8 188 53.7
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 8.0e-39 164.5 161 56.5
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.0e-38 164.1 161 56.5
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 5.2e-38 161.8 196 51.5
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 1.5e-37 160.2 185 53.0
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 2.0e-37 159.8 181 51.9
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 2.0e-37 159.8 178 56.2
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 5.7e-37 158.3 163 54.0
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 3.7e-36 155.6 185 51.4
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 4.8e-36 155.2 185 51.4
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 8.3e-36 154.5 178 53.4
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.1e-35 152.5 186 48.9
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 4.1e-35 152.1 169 55.0
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 5.3e-35 151.8 169 51.5
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 9.1e-35 151.0 171 51.5
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 2.7e-34 149.4 115 72.2
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 1.0e-33 147.5 174 50.6
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.7e-33 146.7 138 60.9
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 2.2e-33 146.4 176 51.7
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 3.8e-33 145.6 107 68.2
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 3.8e-33 145.6 180 48.3
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 3.8e-33 145.6 111 69.4
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 9.4e-32 141.0 185 49.7
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 2.1e-31 139.8 109 66.1
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 3.6e-31 139.0 92 72.8
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 3.6e-31 139.0 193 45.6
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 3.6e-31 139.0 93 74.2
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 1.8e-30 136.7 172 48.8
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 2.3e-30 136.3 189 46.0
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 4.0e-30 135.6 127 55.1
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 8.8e-30 134.4 101 66.3
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.2e-29 134.0 176 47.2
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 2.0e-29 133.3 192 45.8
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 2.0e-29 133.3 192 44.8
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.0e-29 133.3 186 44.6
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 2.6e-29 132.9 106 66.0
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 3.4e-29 132.5 93 68.8
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 4.4e-29 132.1 187 43.3
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 4.4e-29 132.1 98 70.4
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 5.7e-29 131.7 193 45.1
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 7.5e-29 131.3 198 44.9
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.7e-28 130.2 198 42.9
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 2.2e-28 129.8 186 45.2
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 6.3e-28 128.3 198 44.9
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 8.3e-28 127.9 190 43.2
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 8.3e-28 127.9 203 41.9
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 1.1e-27 127.5 193 43.5
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 1.1e-27 127.5 158 50.6
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 2.4e-27 126.3 119 58.0
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 2.4e-27 126.3 107 61.7
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 3.1e-27 125.9 94 69.1
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 4.1e-27 125.6 193 44.6
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 7.0e-27 124.8 202 44.1
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 9.1e-27 124.4 80 76.2
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.2e-26 124.0 188 43.6
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 1.6e-26 123.6 194 42.8
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 1.6e-26 123.6 94 62.8
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 1.6e-26 123.6 111 58.6
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 2.7e-26 122.9 198 42.4
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 3.5e-26 122.5 194 42.3
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 3.5e-26 122.5 98 62.2
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 5.9e-26 121.7 195 42.1
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 5.9e-26 121.7 98 62.2
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 7.7e-26 121.3 198 43.9
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 7.7e-26 121.3 198 43.9
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 1.0e-25 120.9 111 60.4
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.0e-25 120.9 202 43.6
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.3e-25 120.6 113 57.5
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 1.7e-25 120.2 83 67.5
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 2.3e-25 119.8 173 45.7
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 5.0e-25 118.6 214 39.7
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 1.5e-24 117.1 90 67.8
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 1.5e-24 117.1 195 43.6
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 5.5e-24 115.2 177 39.5
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 4.7e-23 112.1 83 68.7
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 3.0e-22 109.4 178 37.1
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 4.0e-22 109.0 178 37.6
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 5.7e-21 105.1 170 37.6
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 9.8e-21 104.4 82 64.6
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.7e-20 103.6 178 37.6
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 6.3e-20 101.7 179 35.8
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 6.3e-20 101.7 106 53.8
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 8.3e-20 101.3 68 66.2
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 1.8e-19 100.1 103 50.5
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 2.7e-18 96.3 57 75.4
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 5.9e-18 95.1 102 49.0
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 5.0e-17 92.0 77 58.4
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 6.6e-17 91.7 71 53.5
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 4.3e-16 89.0 74 52.7
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 4.3e-16 89.0 74 52.7
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 4.3e-16 89.0 74 52.7
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 4.3e-16 89.0 74 52.7
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 1.6e-15 87.0 175 34.9
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 2.1e-15 86.7 175 34.3
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 4.6e-10 68.9 71 46.5
CARHR123780 Cardamine hirsuta HOM05D005957 ORTHO05D007318 7.3e-08 61.6 158 38.0


User provided reference genes

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