Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 8.3e-84 313.5 146 100.0
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.9e-80 302.4 146 96.6
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 6.8e-78 293.9 146 93.2
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 8.9e-78 293.5 146 93.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.1e-74 282.3 147 89.8
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 7.8e-74 280.4 147 88.4
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.5e-72 276.2 146 84.2
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 4.3e-72 274.6 146 86.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 7.3e-72 273.9 146 87.0
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.6e-71 272.7 146 87.0
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.8e-71 271.9 143 89.5
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 6.2e-71 270.8 147 85.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.1e-70 270.0 146 86.3
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 86.3
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.4e-70 269.6 147 84.4
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.8e-70 269.2 148 85.8
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.2e-70 267.7 146 83.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.0e-69 265.8 146 82.2
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 84.9
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 84.9
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.7e-68 262.7 144 81.9
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 2.2e-68 262.3 144 86.8
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 2.2e-68 262.3 144 86.8
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 6.4e-68 260.8 146 82.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 8.4e-68 260.4 140 85.0
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.1e-67 260.0 147 83.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.1e-67 260.0 148 83.8
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 82.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.9e-67 259.2 147 80.3
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.9e-67 259.2 147 80.3
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 81.0
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.2e-67 258.5 143 81.8
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 80.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 7.1e-67 257.3 146 80.8
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.3e-67 256.9 146 80.8
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 9.3e-67 256.9 148 81.8
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.2e-66 256.5 146 80.1
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 79.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 81.5
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 79.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 79.5
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 79.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 3.5e-66 255.0 145 85.5
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.0e-66 254.2 147 78.9
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 7.8e-66 253.8 148 80.4
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 7.8e-66 253.8 146 78.8
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 77.4
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.7e-65 252.7 150 80.0
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 78.1
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 6.6e-65 250.8 145 81.4
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.7e-65 250.4 146 77.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.9
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 78.8
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 78.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 80.4
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.9e-64 249.2 145 82.8
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 77.4
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 76.7
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 79.5
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.6e-64 247.7 148 77.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.6e-64 247.7 130 87.7
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.6e-64 247.7 147 76.2
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 7.3e-64 247.3 146 76.7
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 9.6e-64 246.9 148 77.0
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 74.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.6e-63 246.1 144 78.5
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 76.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 76.0
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 77.4
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 76.0
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 78.1
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 6.2e-63 244.2 145 75.9
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 73.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 75.3
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 75.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 8.1e-63 243.8 143 79.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.1e-62 243.4 132 84.1
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.1e-62 243.4 137 81.8
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 75.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.4e-62 243.0 144 77.8
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 72.6
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 75.3
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.4e-62 242.3 150 79.3
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 75.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 75.3
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 76.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 74.0
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 76.7
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.2e-61 240.0 143 74.8
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 74.8
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.7
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.0e-61 239.2 143 76.2
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 73.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 71.9
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 75.3
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 7.6e-61 237.3 146 74.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 9.9e-61 236.9 147 74.8
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.2e-60 235.7 149 75.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 73.8
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 4.9e-60 234.6 146 72.6
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.9e-60 234.6 149 73.8
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.4e-60 234.2 145 74.5
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.4e-60 233.8 147 74.8
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.4e-59 233.0 151 75.5
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.1e-58 229.2 140 74.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 7.9e-58 227.3 150 72.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.0e-57 226.9 147 74.8
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.3e-57 226.5 146 69.2
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.3e-57 226.5 147 73.5
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.3e-57 226.5 148 73.6
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-57 226.5 147 72.8
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-57 226.5 147 72.8
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-57 226.1 147 73.5
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.8e-57 226.1 147 73.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 6.7e-57 224.2 131 74.8
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-56 223.0 145 71.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.3e-55 219.9 150 72.0
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.3e-55 219.9 133 76.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.6e-55 219.5 125 77.6
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 6.2e-55 217.6 146 65.1
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-54 216.9 150 69.3
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.0e-54 214.9 132 78.0
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-53 213.4 150 67.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.2e-53 213.4 150 67.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-53 213.4 117 81.2
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.0e-53 212.6 146 64.4
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 4.5e-53 211.5 150 68.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 4.5e-53 211.5 150 68.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 4.5e-53 211.5 150 68.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 5.8e-53 211.1 146 67.1
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 9.9e-53 210.3 150 70.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.7e-52 209.5 150 68.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.4e-52 207.2 151 65.6
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 5.5e-51 204.5 146 66.4
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 9.3e-51 203.8 134 72.4
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 148 66.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-50 203.0 148 66.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 148 66.9
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 68.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.0e-49 198.7 123 74.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.5e-48 195.7 146 63.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.0e-44 183.7 146 67.8
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 4.6e-42 174.9 146 61.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 6.0e-42 174.5 101 78.2
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.0e-41 173.7 143 62.9
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 8.7e-41 170.6 101 79.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 4.5e-37 158.3 97 79.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.4e-33 146.7 134 53.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 8.8e-33 144.1 123 57.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 5.5e-27 124.8 141 48.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 2.6e-24 115.9 67 79.1
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.3e-23 113.6 75 74.7
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.1e-22 107.5 127 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.9e-20 102.4 90 54.4
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 7.2e-11 71.2 92 37.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 4.0e-09 65.5 37 73.0
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 4.1e-06 55.5 84 35.7


User provided reference genes

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