Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.2e-260 902.5 432 100.0
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.5e-194 682.9 458 71.6
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.1e-192 676.8 440 74.5
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 4.2e-192 674.9 445 72.8
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 7.2e-192 674.1 444 72.7
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.2e-191 673.3 435 72.9
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 8.0e-191 670.6 410 78.5
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.2e-186 656.8 446 71.5
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.4e-174 616.7 453 65.8
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.2e-172 609.4 453 65.3
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.1e-171 605.1 375 77.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.1e-151 539.7 450 59.1
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 8.0e-151 537.7 380 72.9
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.3e-145 519.6 437 60.0
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.5e-144 516.9 450 58.4
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.1e-143 513.1 443 58.7
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.3e-142 509.6 438 58.7
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.4e-141 505.4 455 56.9
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.7e-140 503.4 448 58.0
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.9e-140 501.9 446 56.3
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-139 500.0 454 55.9
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.2e-138 497.3 462 55.2
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-138 496.5 454 55.5
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.6e-137 491.1 442 54.3
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.6e-137 491.1 442 54.3
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 7.3e-136 488.0 460 52.8
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 7.3e-136 488.0 445 56.2
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-135 487.3 445 56.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.2e-135 487.3 452 53.1
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 4.7e-135 485.3 376 63.0
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 5.2e-134 481.9 462 52.2
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 6.8e-134 481.5 451 55.7
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.2e-133 480.7 466 53.4
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.5e-133 480.3 437 56.1
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 4.4e-133 478.8 475 53.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 5.8e-133 478.4 440 55.0
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.3e-132 477.2 441 55.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.8e-132 475.7 436 55.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.8e-132 475.7 436 55.7
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 6.4e-132 474.9 445 57.3
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.2e-131 472.2 438 55.3
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.6e-130 470.3 420 55.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.0e-129 467.6 367 62.7
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.9e-129 465.7 455 52.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.8e-126 456.8 375 59.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.2e-125 454.1 367 60.8
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 5.8e-125 451.8 455 52.1
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.9e-124 448.7 456 50.9
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.4e-123 446.4 438 52.1
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.4e-123 446.4 455 51.2
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 5.4e-123 445.3 432 53.2
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.5e-122 442.6 456 50.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.9e-121 439.1 466 50.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 6.6e-121 438.3 454 51.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 6.6e-121 438.3 406 54.4
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 7.3e-120 434.9 472 48.9
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.0e-117 426.8 472 48.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 2.9e-116 422.9 453 48.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.9e-116 422.9 452 47.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.2e-115 419.5 449 48.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.5e-114 416.0 459 48.6
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 8.7e-113 411.4 365 55.9
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 5.6e-112 408.7 392 53.8
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 5.6e-112 408.7 449 47.0
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.1e-111 406.8 455 47.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 3.1e-110 402.9 460 47.6
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.1e-110 402.9 457 47.5
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.2e-109 401.0 455 46.6
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 2.0e-109 400.2 455 46.4
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.3e-108 397.5 436 49.8
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-107 394.4 388 53.4
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 9.3e-107 391.3 453 46.4
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 4.6e-106 389.0 453 45.7
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 6.0e-106 388.7 453 45.7
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 7.9e-106 388.3 444 48.0
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 7.9e-106 388.3 449 45.2
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.3e-105 386.7 439 46.9
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 3.0e-105 386.3 428 47.0
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.0e-105 386.3 451 45.5
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.7e-105 384.8 305 62.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.6e-103 380.6 444 47.1
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.8e-103 379.8 491 43.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.4e-102 377.5 397 49.1
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 9.0e-102 374.8 429 45.7
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.5e-101 374.0 438 47.7
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.5e-101 374.0 440 48.0
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 4.5e-101 372.5 439 48.3
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 5.8e-101 372.1 453 45.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-100 370.9 484 42.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 6.5e-100 368.6 363 51.0
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 8.4e-100 368.2 438 46.1
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 9.3e-99 364.8 440 47.0
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 6.1e-98 362.1 436 42.7
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.3e-97 360.1 440 47.5
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.1e-96 357.8 437 46.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 9.7e-96 354.8 438 46.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 5.3e-94 349.0 368 48.4
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 8.5e-92 341.7 445 46.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 4.2e-91 339.3 443 46.5
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.8e-87 325.9 528 38.8
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 3.8e-84 316.2 332 49.4
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-84 316.2 436 42.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.2e-82 311.2 455 44.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 3.6e-82 309.7 347 49.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.1e-80 304.7 287 54.4
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 4.2e-75 286.2 323 46.7
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.6e-74 283.1 486 35.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.3e-73 280.4 439 38.0
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 5.2e-73 279.3 276 52.9
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.5e-72 277.7 281 52.3
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.5e-72 277.7 349 46.1
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.8e-71 272.7 404 37.9
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.1e-70 269.6 428 36.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.5e-67 260.4 205 62.9
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.1e-66 255.8 493 32.9
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.2e-59 233.4 590 29.2
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.2e-58 231.5 236 50.0
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-54 218.4 163 62.6
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.3e-52 210.7 394 33.2
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.6e-45 186.4 543 29.7
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.3e-44 184.9 272 41.5
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.6e-42 176.8 128 59.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-41 174.5 151 53.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-37 161.8 155 50.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.0e-37 159.5 161 47.8
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.6e-29 133.3 94 64.9
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.0e-28 132.1 216 36.6
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 3.0e-28 130.6 97 60.8
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.9e-23 114.0 157 37.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.6e-16 90.9 152 38.2
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.1e-14 85.5 58 70.7
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 3.0e-12 77.4 101 38.6
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 2.5e-11 74.3 71 52.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 5.3e-09 66.6 52 51.9
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 9.0e-09 65.9 38 71.1


User provided reference genes

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