Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 5.3e-237 823.9 406 100.0
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.7e-219 765.8 413 93.0
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.1e-201 705.7 407 87.0
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 3.1e-197 691.8 407 85.0
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 8.9e-184 647.1 409 79.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.5e-183 646.4 409 79.7
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 2.0e-183 646.0 409 79.2
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 3.4e-183 645.2 405 80.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.4e-181 639.8 404 78.7
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 5.4e-181 637.9 404 79.0
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 9.5e-178 627.1 404 77.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-175 620.2 401 76.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-174 616.7 403 75.4
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 8.3e-174 614.0 402 75.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-173 611.3 403 74.9
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 3.0e-171 605.5 409 72.6
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 8.6e-171 604.0 405 73.3
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-169 599.7 409 71.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 3.6e-169 598.6 404 73.3
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.8e-168 596.3 405 73.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 5.2e-168 594.7 402 74.1
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 2.0e-167 592.8 405 71.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.0e-167 592.8 401 73.6
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.4e-167 592.0 405 72.8
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.2e-166 589.3 399 71.7
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.7e-166 588.6 404 72.3
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.4e-165 586.6 404 72.3
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.9e-165 586.3 404 72.3
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.2e-165 585.5 400 71.5
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.4e-165 584.7 397 71.5
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 9.2e-165 583.9 400 70.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.6e-164 583.2 359 77.4
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.6e-164 583.2 342 81.0
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 3.5e-164 582.0 441 66.7
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 3.5e-164 582.0 402 71.9
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 8.6e-163 577.4 404 70.3
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.1e-162 577.0 406 69.7
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 366 75.7
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 366 75.7
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.2e-161 573.5 400 70.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.2e-161 573.5 336 79.2
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.8e-161 572.4 342 79.5
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.6e-161 572.0 431 67.7
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-161 571.6 401 72.6
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 6.2e-161 571.2 401 70.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 6.2e-161 571.2 412 68.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.1e-161 570.9 405 69.6
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.4e-160 570.1 400 70.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.3e-160 569.3 398 69.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.1e-160 568.9 394 71.3
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 3.1e-160 568.9 400 70.0
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.1e-160 568.9 423 66.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 6.8e-160 567.8 341 78.6
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 8.9e-160 567.4 394 71.1
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.5e-159 566.6 411 68.6
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.5e-159 566.6 402 69.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.5e-159 566.6 372 74.7
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.0e-159 566.2 362 74.0
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.0e-159 566.2 404 67.3
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.4e-159 565.1 403 67.5
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 5.8e-159 564.7 404 69.8
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.7e-158 563.1 398 70.1
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 2.2e-158 562.8 401 69.3
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.9e-158 562.4 418 67.5
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.7e-158 562.0 358 75.7
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.7e-158 562.0 391 71.6
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 6.4e-158 561.2 356 73.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 6.4e-158 561.2 339 78.2
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 333 79.6
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 356 76.7
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.4e-157 560.1 333 79.3
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.9e-157 559.7 428 65.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 1.9e-157 559.7 418 66.7
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 9.2e-157 557.4 397 69.8
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.2e-156 557.0 402 67.9
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.1e-156 556.2 340 75.6
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.1e-156 556.2 425 65.4
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.9e-154 549.7 333 76.0
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.5e-154 549.3 348 75.3
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 3.6e-153 545.4 334 75.7
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.4e-152 542.7 406 67.2
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 6.8e-152 541.2 385 71.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 2.6e-151 539.3 344 72.7
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 5.8e-151 538.1 363 71.6
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.3e-150 537.0 320 76.9
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.7e-150 536.6 348 72.1
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.2e-150 536.2 363 70.8
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.9e-150 535.8 406 68.2
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.9e-150 535.8 406 68.2
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 2.9e-150 535.8 298 84.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.1e-149 533.9 403 64.8
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.4e-149 533.5 403 65.8
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.9e-149 533.1 400 65.5
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 3.2e-149 532.3 356 71.3
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 7.1e-149 531.2 325 79.4
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.2e-148 530.4 406 67.7
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.5e-148 528.9 347 72.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 3.5e-148 528.9 405 64.4
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 6.0e-148 528.1 347 72.0
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 6.0e-148 528.1 349 71.6
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.8e-148 527.7 405 65.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-148 527.7 353 70.5
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.3e-147 526.9 321 75.4
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.9e-147 525.4 347 72.3
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.5e-146 523.5 405 63.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 5.6e-146 521.5 351 71.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.6e-145 518.8 395 66.3
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.8e-144 516.5 360 70.0
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.0e-144 515.4 283 84.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 2.0e-143 513.1 345 73.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.6e-143 511.1 279 86.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 2.1e-140 503.1 399 62.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.5e-140 502.3 329 72.3
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 4.6e-140 501.9 334 70.4
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.3e-137 493.8 320 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 2.8e-137 492.7 330 69.4
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.4e-136 489.6 350 67.7
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 8.4e-134 481.1 354 66.7
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 8.4e-134 481.1 342 67.8
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-133 480.7 286 76.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 7.9e-132 474.6 309 72.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 7.9e-132 474.6 309 72.5
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.8e-128 463.4 321 66.0
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 9.0e-128 461.1 350 64.9
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.1e-122 444.1 330 65.8
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.5e-122 443.7 437 56.1
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-119 434.1 335 63.3
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.5e-114 416.4 336 61.9
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 3.4e-111 406.0 328 58.8
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 8.8e-107 391.3 263 71.1
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 3.3e-106 389.4 371 54.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.4e-103 379.4 270 70.4
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 3.8e-102 375.9 303 59.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.5e-95 352.8 330 56.4
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-92 342.4 364 53.6
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.2e-82 311.2 188 76.1
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.1e-80 303.1 215 69.3
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 9.1e-80 301.6 248 63.3
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.0e-74 283.9 157 83.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.7e-73 280.8 163 81.0
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.6e-71 274.2 275 54.5
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.7e-63 246.9 143 76.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.3e-61 238.8 235 56.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-59 233.4 254 53.9
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 9.8e-58 228.4 314 43.3
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 9.2e-56 221.9 318 44.7
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 2.5e-53 213.8 116 87.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 8.0e-52 208.8 132 78.8
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.4e-49 199.1 186 58.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-45 188.0 186 56.5
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-45 188.0 186 56.5
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-44 183.3 122 77.0
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-32 143.7 159 53.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-32 143.7 159 53.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.2e-28 129.4 232 35.8
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.3e-21 107.1 178 36.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 8.4e-17 92.4 53 71.7
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 8.4e-17 92.4 53 71.7
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 7.9e-15 85.9 51 80.4
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.0e-09 68.9 44 77.3
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-09 68.9 39 84.6
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 1.3e-09 68.6 56 64.3
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 1.3e-09 68.6 56 64.3
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 2.5e-08 64.3 106 42.5
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 2.5e-08 64.3 35 77.1
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 1.0e-06 58.9 41 65.9
SGA_v2.0_scaffold80G25734 Striga asiatica HOM05D040281 ORTHO05D035895 8.7e-06 55.8 38 71.1


User provided reference genes

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