Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.2e-176 621.7 327 100.0
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 7.4e-149 530.8 327 88.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 6.2e-111 404.8 332 72.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.4e-110 403.7 325 72.9
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.7e-100 369.0 318 65.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.3e-97 359.8 316 61.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.5e-96 356.3 316 61.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.3e-96 355.9 316 62.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-92 343.6 319 61.8
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.7e-92 343.6 307 65.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 4.9e-92 342.0 319 61.8
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 4.2e-91 339.0 321 63.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.2e-91 339.0 325 61.5
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.7e-89 333.6 319 59.2
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 6.6e-89 331.6 316 59.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.9e-88 330.1 367 55.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.9e-88 330.1 319 60.5
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 7.3e-88 328.2 319 59.6
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.6e-88 327.8 319 58.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-86 323.6 323 58.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.9e-86 321.6 321 58.9
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 6.9e-86 321.6 321 58.3
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.4e-85 319.3 318 56.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.8e-85 318.5 320 58.1
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.8e-85 318.5 319 60.2
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.8e-85 318.5 324 57.7
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.9e-85 317.8 318 56.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-84 316.6 318 56.6
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 8.4e-84 314.7 316 57.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.2e-83 312.8 319 56.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 9.3e-83 311.2 319 57.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 9.3e-83 311.2 320 58.8
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-82 310.8 320 57.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-82 310.1 319 56.1
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 7.8e-82 308.1 322 55.9
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 6.6e-81 305.1 320 58.8
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 5.6e-80 302.0 321 57.3
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 5.6e-80 302.0 319 55.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 9.6e-80 301.2 321 54.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.1e-79 300.1 318 56.0
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.8e-79 299.7 320 57.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.2e-79 298.5 316 56.3
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 6.2e-79 298.5 317 55.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 8.1e-79 298.1 319 55.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.8e-78 297.0 318 55.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.8e-78 297.0 319 55.2
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.8e-78 297.0 370 51.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-78 296.6 321 57.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 9.9e-77 291.2 319 53.3
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.7e-76 290.4 321 54.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.9e-76 288.9 320 53.8
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 8.4e-76 288.1 326 55.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.9e-75 287.0 320 53.8
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.2e-75 285.8 319 54.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.4e-75 285.4 319 52.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.4e-75 285.4 319 53.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.1e-74 283.5 326 54.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.5e-74 282.7 319 52.4
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 6.0e-74 282.0 276 57.6
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 6.0e-74 282.0 319 54.9
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.3e-73 280.0 319 53.9
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.0e-73 279.6 379 46.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 3.9e-73 279.3 324 55.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.9e-73 279.3 320 51.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.7e-73 278.5 318 52.8
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 6.7e-73 278.5 305 54.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.3e-72 275.8 319 53.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.4e-72 275.0 286 57.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 9.6e-72 274.6 319 53.9
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.8e-71 273.1 319 52.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 6.2e-71 271.9 319 51.4
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 6.2e-71 271.9 379 45.6
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 6.2e-71 271.9 319 53.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 8.1e-71 271.6 319 51.1
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.1e-70 271.2 298 55.4
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 6.9e-70 268.5 320 51.6
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-69 267.7 322 51.9
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.0e-69 266.9 321 52.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.6e-69 266.5 326 50.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.3e-68 264.2 367 47.7
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-68 263.8 316 50.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 4.9e-68 262.3 320 52.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.5e-67 258.8 319 50.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.2e-66 257.7 392 45.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 4.6e-66 255.8 320 50.0
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.0e-65 253.1 318 49.7
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.6e-64 248.1 318 49.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.6e-64 248.1 318 49.1
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-63 246.5 318 48.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.8e-63 245.7 318 48.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.4e-62 244.2 333 46.2
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.0e-62 242.7 323 46.7
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.5e-61 240.7 326 48.8
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.2e-59 233.0 325 45.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.2e-58 231.1 318 47.2
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.9e-58 228.4 264 50.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.9e-57 226.1 377 43.2
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.3e-56 222.6 319 47.3
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.3e-56 222.6 320 45.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.4e-56 221.9 325 45.5
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-55 220.7 321 45.2
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-55 219.9 278 47.8
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.8e-54 217.2 309 44.7
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 7.7e-53 211.8 327 45.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.2e-52 210.3 318 42.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.9e-52 209.9 318 42.5
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.9e-52 209.9 255 50.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-52 209.9 294 45.2
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 7.2e-51 205.3 294 45.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 9.4e-51 204.9 351 39.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.6e-50 202.6 302 41.7
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 6.1e-50 202.2 318 42.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-49 201.1 294 45.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.4e-49 201.1 308 43.5
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 6.7e-49 198.7 318 41.8
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 8.8e-49 198.4 296 43.2
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-48 197.2 319 42.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 5.7e-48 195.7 304 42.8
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 7.4e-48 195.3 304 43.1
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.7e-47 193.0 318 41.8
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 4.8e-47 192.6 321 41.1
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.4e-46 190.3 252 48.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.9e-46 188.7 350 40.3
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.5e-45 187.6 251 48.2
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.7e-45 185.3 378 37.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.5e-44 182.2 303 40.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.1e-43 181.4 295 42.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-43 180.6 298 41.6
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.9e-43 180.6 195 54.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 9.4e-43 178.3 317 41.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 9.4e-43 178.3 317 41.0
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-40 171.4 322 41.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-37 161.4 147 60.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.5e-37 159.5 316 38.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.7e-34 149.4 148 56.1
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.3e-33 147.1 298 40.6
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.5e-32 144.4 208 42.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 7.4e-32 142.1 152 55.9
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 9.7e-32 141.7 163 50.9
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.3e-30 136.0 309 36.2
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.0e-30 135.6 175 49.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.0e-30 135.6 164 48.8
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.1e-30 135.2 164 48.8
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.6e-29 133.7 372 32.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-29 133.7 156 54.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.5e-29 133.3 267 39.7
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.9e-29 132.5 162 49.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 7.7e-29 132.1 234 40.6
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.2e-27 126.7 318 34.9
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-25 121.3 125 56.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.8e-25 120.9 252 38.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 5.2e-25 119.4 263 35.0
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.2e-25 119.4 223 40.4
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.8e-25 119.0 111 59.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.4e-24 116.7 289 36.0
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.7e-23 114.4 229 40.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.7e-23 114.4 167 41.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.8e-22 110.9 197 41.1
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 2.7e-21 107.1 123 58.5
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-20 103.2 376 28.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 5.0e-20 102.8 124 57.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-19 101.7 192 41.1
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.8e-17 94.4 92 57.6
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 5.2e-17 92.8 165 37.0
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 5.2e-17 92.8 165 37.0
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-14 84.7 86 53.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.2e-13 81.6 208 32.7
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 6.6e-12 75.9 106 49.1
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.1e-11 75.1 101 48.5
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.5e-11 74.7 316 27.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.8e-10 70.5 217 31.3
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.8e-10 70.5 217 31.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.8e-09 67.8 48 68.8
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 3.0e-09 67.0 60 55.0
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.4e-08 63.5 227 31.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-07 60.1 202 29.7
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 8.3e-07 58.9 99 45.5
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.1e-06 58.5 89 41.6
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 1.4e-06 58.2 87 42.5
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-06 57.8 46 60.9


User provided reference genes

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