Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 5.8e-92 340.9 174 100.0
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.7e-91 339.3 174 99.4
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.2e-89 333.2 174 96.6
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.5e-89 331.6 174 96.0
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 6.0e-89 330.9 174 96.0
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 6.9e-85 317.4 174 90.8
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 1.7e-83 312.8 174 89.1
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 2.9e-83 312.0 174 87.4
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 3.0e-80 302.0 174 85.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.1e-79 300.1 175 85.1
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.1e-79 300.1 175 84.6
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 1.9e-79 299.3 174 85.1
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 4.3e-79 298.1 198 78.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 8.2e-78 293.9 174 82.8
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 8.2e-78 293.9 174 82.8
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.4e-77 293.1 174 83.9
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 4.0e-77 291.6 174 83.3
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 5.3e-77 291.2 174 82.2
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 82.2
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 1.5e-76 289.7 174 81.6
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.4e-76 288.5 174 81.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 4.5e-76 288.1 174 81.0
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 4.9e-75 284.6 174 79.9
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.9e-74 282.7 174 79.3
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 79.3
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 79.9
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 79.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 78.2
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 78.2
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 78.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 5.5e-74 281.2 194 75.8
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 80.5
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 78.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 77.6
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.7
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 79.3
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 81.0
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.3e-72 276.6 174 78.7
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 78.2
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 77.6
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 5.1e-72 274.6 174 79.3
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 76.4
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 76.4
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.1
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 73.6
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 77.0
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 73.6
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 74.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 73.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 73.0
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 76.4
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 76.4
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 75.3
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 71.3
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.3e-67 260.0 171 75.4
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.8
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 73.6
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 72.4
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.9e-67 258.8 173 72.3
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 74.1
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 72.4
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.6
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 73.6
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 71.3
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 73.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 73.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 71.3
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.0e-64 250.4 164 72.6
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 71.3
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.0e-64 250.4 158 77.2
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 71.8
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 3.9e-64 248.4 164 72.0
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.1e-64 248.1 156 75.6
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 5.1e-64 248.1 174 70.7
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 143 80.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 70.7
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.7e-62 243.0 171 70.8
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.7e-62 243.0 146 82.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 69.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 69.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 69.0
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 69.5
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 70.7
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 69.0
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 9.1e-61 237.3 173 68.2
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 69.5
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.2e-59 232.6 174 68.4
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 5.0e-59 231.5 151 70.9
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 5.0e-59 231.5 175 68.0
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.1e-57 226.1 147 78.2
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 63.8
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 67.2
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 67.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.1e-55 220.3 122 86.1
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 63.8
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 7.4e-55 217.6 174 63.2
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 7.4e-55 217.6 196 58.7
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 1.7e-54 216.5 174 64.4
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.8e-54 215.7 174 63.8
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.6e-52 209.1 176 65.3
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 4.5e-52 208.4 122 78.7
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.9e-52 208.0 122 79.5
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.3e-51 206.8 171 61.4
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.7e-51 206.5 171 61.4
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.2e-50 201.8 239 48.1
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.5e-47 193.4 190 56.8
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 2.6e-47 192.6 171 55.0
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.7e-46 189.9 175 57.1
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 5.5e-42 174.9 172 52.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 2.1e-41 172.9 176 51.7
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.3e-40 169.5 173 55.5
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 6.7e-40 167.9 95 80.0
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.3e-38 163.7 94 79.8
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 4.1e-37 158.7 94 76.6
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 9.1e-37 157.5 173 45.7
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 3.5e-36 155.6 93 74.2
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 7.0e-29 131.3 85 68.2
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 7.2e-26 121.3 96 54.2
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-25 120.6 127 55.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.8e-24 116.7 75 66.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 8.9e-24 114.4 81 64.2
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.3e-22 110.5 170 38.2
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 2.0e-20 103.2 85 62.4
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.1e-18 97.4 176 33.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.6e-18 95.1 55 74.5
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.8e-17 92.8 53 77.4
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.2e-15 87.4 48 79.2
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.8e-13 80.1 94 51.1
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 2.3e-11 73.2 175 31.4
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.0e-11 72.0 38 78.9


User provided reference genes

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