Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 4.0e-201 704.5 347 100.0
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 3.0e-188 661.8 347 93.9
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 8.1e-170 600.5 345 83.8
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.8e-169 599.4 348 83.9
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 2.4e-169 599.0 348 84.2
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 4.0e-169 598.2 342 84.8
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 6.4e-167 590.9 345 83.5
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 7.1e-166 587.4 347 81.8
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 2.1e-162 575.9 347 80.4
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 4.0e-161 571.6 348 79.6
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 3.7e-146 521.9 349 73.6
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 3.7e-146 521.9 349 73.6
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 3.3e-139 498.8 346 70.2
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 4.1e-137 491.9 342 70.8
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.4e-136 488.8 344 69.5
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.7e-136 487.6 344 69.8
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-134 483.8 348 69.3
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 2.5e-134 482.6 348 69.8
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.1e-133 479.6 344 68.0
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 5.1e-132 474.9 344 69.2
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.1e-131 473.8 342 69.0
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 2.6e-131 472.6 344 68.0
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 2.6e-131 472.6 348 68.4
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 2.6e-131 472.6 344 70.6
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 5.7e-131 471.5 343 68.5
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 8.2e-130 467.6 343 66.8
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 1.1e-129 467.2 343 67.6
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.4e-129 466.1 343 66.5
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 1.2e-128 463.8 344 68.6
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.2e-128 463.8 343 66.5
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.5e-128 462.2 332 69.0
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 7.7e-128 461.1 351 66.4
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 1.0e-127 460.7 369 64.5
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 2.2e-127 459.5 348 67.2
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 6.5e-127 458.0 351 66.4
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.5e-126 456.1 343 65.9
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 7.2e-126 454.5 360 63.9
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 7.2e-126 454.5 351 66.4
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 7.2e-126 454.5 351 66.4
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 8.0e-125 451.1 346 65.3
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.4e-124 450.3 351 64.7
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 2.6e-123 446.0 358 64.2
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 2.8e-122 442.6 351 63.8
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 2.8e-122 442.6 351 63.8
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 9.1e-121 437.6 346 63.9
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.2e-120 437.2 349 63.6
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.5e-119 431.0 344 64.2
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 1.8e-116 423.3 348 62.9
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.3e-116 422.9 346 62.4
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 4.0e-116 422.2 346 62.1
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 4.0e-116 422.2 349 62.2
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 5.2e-116 421.8 349 63.0
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 5.2e-116 421.8 348 61.2
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.8e-116 421.4 344 62.2
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 3.4e-115 419.1 347 60.8
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 3.4e-115 419.1 347 60.8
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 4.4e-115 418.7 353 62.3
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 2.8e-114 416.0 335 63.9
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 4.8e-114 415.2 354 59.9
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 8.3e-114 414.5 349 59.0
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 1.1e-113 414.1 352 61.1
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.4e-113 413.7 347 60.2
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.4e-113 412.9 344 59.9
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 3.1e-113 412.5 352 60.2
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 7.0e-113 411.4 329 64.7
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 2.0e-112 409.8 353 60.9
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 2.0e-112 409.8 345 62.0
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 3.5e-112 409.1 352 60.2
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 5.9e-112 408.3 345 61.2
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 1.0e-111 407.5 350 60.6
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.0e-111 407.5 369 57.2
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 1.3e-111 407.1 345 60.3
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 1.1e-110 404.1 344 60.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.5e-110 403.7 349 59.3
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 2.5e-110 402.9 356 59.0
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 1.2e-109 400.6 326 62.9
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 1.6e-109 400.2 354 58.8
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 2.1e-109 399.8 342 60.2
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 3.0e-108 396.0 351 59.5
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.2e-108 395.2 367 56.9
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 1.2e-107 394.0 349 57.3
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.5e-107 393.7 347 56.8
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 3.4e-107 392.5 355 58.3
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.0e-103 380.9 328 61.6
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 1.0e-103 380.9 322 58.7
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.3e-103 380.6 328 61.6
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.7e-103 380.2 328 61.0
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.5e-102 377.1 360 55.3
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.6e-101 373.6 354 56.2
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 4.7e-101 372.1 327 60.2
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 3.4e-99 365.9 332 58.1
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 3.2e-97 359.4 352 55.1
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 1.5e-94 350.5 224 75.4
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 4.3e-94 349.0 356 54.8
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.0e-91 340.1 262 63.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 3.2e-89 332.8 234 67.9
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 5.0e-87 325.5 230 69.6
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 9.5e-86 321.2 347 51.0
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 1.0e-79 301.2 354 50.0
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 2.3e-76 290.0 350 45.4
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 3.2e-73 279.6 276 53.3
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.4e-68 264.2 163 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 3.5e-64 249.6 367 39.2
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.0e-63 246.5 203 63.1
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 3.0e-63 246.5 200 61.5
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.3e-62 243.0 200 62.5
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-61 241.1 203 61.1
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 3.6e-61 239.6 204 58.3
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 1.1e-60 238.0 318 46.5
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 6.0e-56 222.2 203 59.1
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 6.2e-53 212.2 146 71.9
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 3.3e-46 189.9 235 46.8
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 5.6e-46 189.1 379 33.8
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-43 180.6 118 72.0
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 1.0e-42 178.3 141 57.4
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.2e-37 159.1 199 45.7
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 9.3e-33 145.2 163 44.2
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.9e-24 115.5 63 84.1
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.7e-22 108.6 63 77.8
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.5e-18 95.9 63 73.0
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 1.2e-11 75.1 52 61.5
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.5e-11 74.7 159 34.0
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 4.5e-11 73.2 155 29.7
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 53 58.5
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 53 58.5
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 53 58.5
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 1.3e-10 71.6 92 40.2
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 3.8e-10 70.1 52 57.7
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 6.7e-07 59.3 56 55.4
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 2.0e-06 57.8 49 53.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.0e-06 57.8 49 53.1
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 2.0e-06 57.8 49 53.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 2.0e-06 57.8 49 53.1


User provided reference genes

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