Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G204650 Glycine max HOM05D002928 ORTHO05D034233 1.8e-24 115.2 60 100.0
Migut.J01351 Erythranthe guttata HOM05D002928 ORTHO05D003794 1.4e-13 79.0 41 97.6
arahy.Tifrunner.gnm1.ann1.AAXI8T Arachis hypogaea HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
arahy.Tifrunner.gnm1.ann1.V0HTQD Arachis hypogaea HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
MSTRG.19654 Avicennia marina HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Ca_21132_v3 Cicer arietinum L. HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
FvH4_1g00830 Fragaria vesca HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
FAN23G2032 Fragaria x ananassa HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
FAN26G1266 Fragaria x ananassa HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
FAN28G2936 Fragaria x ananassa HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Glyma.06G220500 Glycine max HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Glyma.17G073300 Glycine max HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Lj4g0021489 Lotus japonicus HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Lj6g0013054 Lotus japonicus HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Lalb_Chr11g0072651 Lupinus albus HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Lalb_Chr13g0300841 Lupinus albus HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Manes.06G034500 Manihot esculenta HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Manes.14G144400 Manihot esculenta HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Medtr4g130770 Medicago truncatula HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Nn2g12407 Nelumbo nucifera HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Phvul.003G155500 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Phvul.009G194700 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Psat0s2403g0040 Pisum sativum HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
QL02p068861 Quercus lobata HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
QL02p093370 Quercus lobata HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
SalBow1G3419 Salvia bowleyana HOM05D002928 ORTHO05D003794 1.9e-13 78.6 40 100.0
TPR.G30712 Trifolium pratense HOM05D002928 ORTHO05D003794 1.9e-13 78.6 40 100.0
VMungo1215G3047 Vigna mungo HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
VMungo1309G0506 Vigna mungo HOM05D002928 ORTHO05D003794 1.9e-13 78.6 41 97.6
Lj1C1017T2 Lonicera japonica HOM05D002928 ORTHO05D003794 2.4e-13 78.2 44 88.6
Atru.chr7.18 Acer truncatum HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
CANSAT11G1221 Cannabis sativa HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Cpa.g.sc46.162 Carica papaya HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Cfa020818 Carpinus fangiana HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
CiPaw.15G167900 Carya illinoinensis HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
COL.COLO4_18815 Corchorus olitorius HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Haze_19196 Corylus avellana HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Dinv41370 Davidia involucrata HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Dinv42848 Davidia involucrata HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Dinv43252 Davidia involucrata HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
ECA248G1996 Erigeron canadensis HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Eucgr.C02497 Eucalyptus grandis HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Eucgr.C02536 Eucalyptus grandis HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
FvH4_2g11040 Fragaria vesca HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
FAN24G1218 Fragaria x ananassa HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
HanXRQChr05g0143981 Helianthus annuus HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
HanXRQChr06g0180611 Helianthus annuus HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Hma1.2p1_0222F.1_g093640 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Lsat_1_v5_gn_8_63581 Lactuca sativa HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Lj1C1019G10 Lonicera japonica HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
MD02G1006600 Malus domestica HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
MD15G1151700 Malus domestica HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Nn8g39922 Nelumbo nucifera HOM05D002928 ORTHO05D003794 4.1e-13 77.4 42 95.2
Nitab4.5_0002891g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Nitab4.5_0008875g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Peaxi162Scf00062g00219 Petunia axillaris HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Potri.006G183600 Populus trichocarpa HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Potri.018G105900 Populus trichocarpa HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Prupe.7G264100 Prunus persica HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Rhsim01G0028300 Rhododendron simsii HOM05D002928 ORTHO05D003794 4.1e-13 77.4 40 97.5
Rhsim03G0257400 Rhododendron simsii HOM05D002928 ORTHO05D003794 4.1e-13 77.4 40 97.5
RcHm_v2.0_Chr2g0085561 Rosa chinensis HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Sabra06G0139500 Salix brachista HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Sabra18G0090300 Salix brachista HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
SGA_v2.0_scaffold45G17027 Striga asiatica HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Thecc.09G029000 Theobroma cacao HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
vmacro16797 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 4.1e-13 77.4 40 97.5
GSVIVG01023620001 Vitis vinifera HOM05D002928 ORTHO05D003794 4.1e-13 77.4 41 95.1
Duzib187G0297 Durio zibethinus HOM05D002928 ORTHO05D003794 5.4e-13 77.0 41 95.1
Gohir.A07G027100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 5.4e-13 77.0 41 95.1
Gohir.D07G031100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 5.4e-13 77.0 41 95.1
Gorai.001G032400 Gossypium raimondii HOM05D002928 ORTHO05D003794 5.4e-13 77.0 41 95.1
Actinidia24380 Actinidia chinensis HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 95.1
CSS0004317 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
CSS0013967 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
CSS0014470 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
CSS0027124 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
CAN.G160.55 Capsicum annuum HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
CAN.G551.45 Capsicum annuum HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
Ciclev10007753m.g Citrus clementina HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
Solyc12g009990.2 Solanum lycopersicum HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
Sopen12g004860 Solanum pennellii HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
PGSC0003DMG400007905 Solanum tuberosum HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
TWI34G1864 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 9.2e-13 76.3 41 92.7
Aqoxy3G02300 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 1.2e-12 75.9 41 92.7
Actinidia38670 Actinidia chinensis HOM05D002928 ORTHO05D003794 1.6e-12 75.5 41 92.7
COL.COLO4_22866 Corchorus olitorius HOM05D002928 ORTHO05D003794 1.6e-12 75.5 41 92.7
Peaxi162Scf00643g00413 Petunia axillaris HOM05D002928 ORTHO05D003794 1.6e-12 75.5 41 92.7
PSO210G4055 Papaver somniferum HOM05D002928 ORTHO05D003794 2.1e-12 75.1 41 87.8
PSO210G6788 Papaver somniferum HOM05D002928 ORTHO05D003794 2.1e-12 75.1 41 87.8
PSO384G2120 Papaver somniferum HOM05D002928 ORTHO05D003794 2.1e-12 75.1 41 92.7
PSO591G0067 Papaver somniferum HOM05D002928 ORTHO05D003794 2.1e-12 75.1 41 92.7
PGR102G2877 Punica granatum HOM05D002928 ORTHO05D003794 2.1e-12 75.1 41 90.2
Ah.03g147670 Amaranthus hybridus HOM05D002928 ORTHO05D003794 2.7e-12 74.7 41 90.2
AUR62003540 Chenopodium quinoa HOM05D002928 ORTHO05D003794 2.7e-12 74.7 41 90.2
AUR62017854 Chenopodium quinoa HOM05D002928 ORTHO05D003794 2.7e-12 74.7 41 90.2
Oeu054272.1 Olea europaea HOM05D002928 ORTHO05D003794 2.7e-12 74.7 41 90.2
Hund04383 Selenicereus undatus HOM05D002928 ORTHO05D003794 2.7e-12 74.7 40 92.5
TAR383G0178 Trochodendron aralioides HOM05D002928 ORTHO05D003794 2.7e-12 74.7 41 92.7
Aqoxy1G00970 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 90.2
Cc06_g14860 Coffea canephora HOM05D002928 ORTHO05D003794 3.5e-12 74.3 40 92.5
Gohir.A06G098000 Gossypium hirsutum HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 92.7
Gorai.010G113600 Gossypium raimondii HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 92.7
Sed0012591 Sechium edule HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 90.2
Sed0017586 Sechium edule HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 90.2
unitig_0.g516 Utricularia gibba HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 90.2
unitig_60.g25522 Utricularia gibba HOM05D002928 ORTHO05D003794 3.5e-12 74.3 41 90.2
Peaxi162Scf01764g00002 Petunia axillaris HOM05D002928 ORTHO05D003794 4.6e-12 73.9 41 90.2
SGA_v2.0_scaffold426G51505 Striga asiatica HOM05D002928 ORTHO05D003794 4.6e-12 73.9 41 90.2
THA.LOC104803542 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 4.6e-12 73.9 41 90.2
TWI32G1175 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 4.6e-12 73.9 41 90.2
TAR625G0332 Trochodendron aralioides HOM05D002928 ORTHO05D003794 4.6e-12 73.9 41 90.2
vmacro05439 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 4.6e-12 73.9 40 95.0
ATR0115G002 Amborella trichopoda HOM05D002928 ORTHO05D003794 6.0e-12 73.6 41 92.7
PSO063G7436 Papaver somniferum HOM05D002928 ORTHO05D003794 6.0e-12 73.6 41 90.2
PSO339G1052 Papaver somniferum HOM05D002928 ORTHO05D003794 6.0e-12 73.6 41 90.2
SGA_v2.0_scaffold23G10013 Striga asiatica HOM05D002928 ORTHO05D003794 6.0e-12 73.6 41 90.2
THA.LOC104819994 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 6.0e-12 73.6 41 90.2
Aa31LG2G19920 Aethionema arabicum HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BcaC09g51851 Brassica carinata HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BcaNung00569 Brassica carinata HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BcaNung02974 Brassica carinata HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BcaNung04564 Brassica carinata HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
A01p07640 Brassica napus HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
A03p60120 Brassica napus HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
C07p58050 Brassica napus HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BolC7t46263H Brassica oleracea HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BraA01t00707Z Brassica rapa HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
BraA03t15057Z Brassica rapa HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
CARHR238470 Cardamine hirsuta HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
ClCG02G014440 Citrullus lanatus HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
MELO3C004130.2 Cucumis melo HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
CsaV3_2G007560 Cucumis sativus L. HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
MBI16_g24666_MAGBIO Magnolia biondii HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 92.7
Sp7g28470 Schrenkiella parvula HOM05D002928 ORTHO05D003794 7.8e-12 73.2 41 87.8
Gohir.D06G098500 Gossypium hirsutum HOM05D002928 ORTHO05D003794 1.0e-11 72.8 41 90.2
EL10Ac6g15341 Beta vulgaris HOM05D002928 ORTHO05D003794 1.3e-11 72.4 41 87.8
Nitab4.5_0001571g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 1.3e-11 72.4 37 97.3
Nitab4.5_0005653g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 1.3e-11 72.4 37 97.3
Carub.0007s0997 Capsella rubella HOM05D002928 ORTHO05D003794 2.3e-11 71.6 41 87.8
Lj1C1016G8 Lonicera japonica HOM05D002928 ORTHO05D003794 2.3e-11 71.6 56 71.4
CBR_g18888 Chara braunii HOM05D002928 ORTHO05D003794 3.0e-11 71.2 40 87.5
Duzib168G1829 Durio zibethinus HOM05D002928 ORTHO05D003794 3.0e-11 71.2 41 87.8
Rhsim01G0028400 Rhododendron simsii HOM05D002928 ORTHO05D011390 3.0e-11 71.2 44 81.8
Oeu052208.1 Olea europaea HOM05D002928 ORTHO05D003794 3.9e-11 70.9 39 92.3
AL7G21540 Arabidopsis lyrata HOM05D002928 ORTHO05D003794 5.1e-11 70.5 41 85.4
AT4G30600 Arabidopsis thaliana HOM05D002928 ORTHO05D003794 5.1e-11 70.5 41 85.4
SEGI_12988 Sequoiadendron giganteum HOM05D002928 ORTHO05D003794 5.1e-11 70.5 41 85.4
CiPaw.16G110200 Carya illinoinensis HOM05D002928 ORTHO05D003794 6.6e-11 70.1 41 85.4
HPP92_005048 Vanilla planifolia HOM05D002928 ORTHO05D003794 8.6e-11 69.7 41 85.4
HPP92_005065 Vanilla planifolia HOM05D002928 ORTHO05D003794 8.6e-11 69.7 41 85.4
ATR0772G178 Amborella trichopoda HOM05D002928 ORTHO05D003794 1.1e-10 69.3 41 87.8
CiPaw.16G109700 Carya illinoinensis HOM05D002928 ORTHO05D034233 1.1e-10 69.3 41 87.8
Mapoly0062s0007 Marchantia polymorpha HOM05D002928 ORTHO05D003794 1.1e-10 69.3 41 82.9
Os08g0480100 Oryza sativa ssp. japonica HOM05D002928 ORTHO05D003794 1.1e-10 69.3 41 85.4
Sc10g0008640 Simmondsia chinensis HOM05D002928 ORTHO05D003794 1.1e-10 69.3 40 87.5
CDE03G0364 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 2.5e-10 68.2 41 85.4
CDE06G1463 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 2.5e-10 68.2 41 85.4
Actinidia23555 Actinidia chinensis HOM05D002928 ORTHO05D002632 1.2e-09 65.9 42 81.0
Thhalv10024667m.g Eutrema salsugineum HOM05D002928 ORTHO05D003794 1.6e-09 65.5 41 80.5
Lju50E10G0 Lonicera japonica HOM05D002928 ORTHO05D034233 2.1e-09 65.1 36 88.9
C01p08330 Brassica napus HOM05D002928 ORTHO05D003794 8.1e-09 63.2 41 75.6
BolC1t00819H Brassica oleracea HOM05D002928 ORTHO05D003794 8.1e-09 63.2 41 75.6
FAN20G1404 Fragaria x ananassa HOM05D002928 ORTHO05D003794 1.1e-08 62.8 32 96.9
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.1e-08 62.8 44 72.7
Pp3c19_22330 Physcomitrium patens HOM05D002928 ORTHO05D003794 8.9e-08 59.7 41 70.7
CiPaw.16G110000 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.6e-07 58.2 42 66.7
TPR.G24848 Trifolium pratense HOM05D002928 ORTHO05D003794 2.6e-07 58.2 30 96.7
Hma1.2p1_1036F.1_g250545 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 5.8e-07 57.0 36 80.6
AagrBONN_evm.TU.Sc2ySwM_344.2608 Anthoceros agrestis HOM05D002928 ORTHO05D003794 1.7e-06 55.5 34 82.4
CiPaw.16G108700 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.9e-06 54.7 38 81.6
SMO367G0463 Selaginella moellendorffii HOM05D002928 ORTHO05D003794 4.9e-06 53.9 33 78.8
Lsat_1_v5_gn_9_62381 Lactuca sativa HOM05D002928 ORTHO05D003794 6.4e-06 53.5 35 77.1


User provided reference genes

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