Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.4e-204 716.1 363 100.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 6.1e-184 647.5 365 91.2
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.0e-175 620.2 363 86.0
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 3.6e-160 568.5 363 81.3
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 2.2e-154 549.3 367 77.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 3.6e-152 542.0 369 77.0
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 7.5e-150 534.3 371 75.7
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 2.8e-149 532.3 358 76.8
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 3.6e-144 515.4 366 75.1
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 2.4e-140 502.7 375 71.5
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 2.0e-139 499.6 377 73.2
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.2e-134 483.8 382 68.1
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.8e-132 476.5 374 67.1
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.1e-132 475.3 373 69.4
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 7.0e-132 474.6 376 67.0
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-131 473.0 374 68.4
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-131 473.0 374 68.4
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-131 473.0 370 68.9
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.7e-131 472.6 373 68.4
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 7.8e-131 471.1 385 65.7
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 2.3e-130 469.5 376 66.8
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.9e-129 466.5 383 66.6
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.5e-129 466.1 370 67.8
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 4.3e-129 465.3 377 65.8
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.2e-128 463.8 374 66.6
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 6.2e-128 461.5 390 65.9
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.1e-127 460.7 379 66.8
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 6.8e-127 458.0 377 66.3
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 8.9e-127 457.6 382 67.0
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.2e-126 457.2 370 66.2
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.2e-126 457.2 384 65.9
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.4e-126 455.3 390 65.4
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.1e-124 450.7 380 64.7
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.2e-124 447.6 378 63.5
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.2e-123 447.2 377 65.3
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 3.5e-123 445.7 383 64.5
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.5e-123 445.7 375 65.1
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 3.0e-122 442.6 358 65.9
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 5.0e-122 441.8 380 64.5
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.1e-121 440.7 382 63.9
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 1.9e-121 439.9 370 65.7
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 3.3e-121 439.1 383 63.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 3.3e-121 439.1 370 65.4
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.3e-121 438.7 383 62.7
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.5e-121 437.6 369 66.1
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 9.5e-121 437.6 373 62.7
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.1e-120 436.4 393 61.8
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.7e-120 435.3 369 65.6
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.1e-119 434.1 368 65.5
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 8.9e-119 431.0 374 63.1
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.2e-118 430.6 374 62.0
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 2.0e-118 429.9 379 62.8
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 2.6e-118 429.5 368 63.3
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 3.4e-118 429.1 378 63.0
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 4.4e-118 428.7 389 60.4
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.4e-118 428.7 392 61.0
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 2.2e-117 426.4 392 61.0
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 2.2e-117 426.4 392 61.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 2.9e-117 426.0 370 64.3
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.2e-115 420.6 373 61.9
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 2.7e-115 419.5 386 60.9
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 3.0e-114 416.0 353 65.7
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 6.6e-114 414.8 358 64.5
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 2.5e-113 412.9 358 64.2
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.5e-113 412.9 360 63.3
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.8e-111 406.8 348 65.2
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 5.2e-111 405.2 375 59.5
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 6.8e-111 404.8 382 60.2
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.2e-110 404.1 376 60.1
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.0e-110 403.3 363 62.3
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 4.4e-110 402.1 388 58.8
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 4.4e-110 402.1 395 58.7
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 7.6e-110 401.4 341 63.6
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.3e-109 400.6 378 60.3
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.7e-109 400.2 400 58.0
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.4e-108 397.1 376 59.8
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.4e-108 395.2 390 57.2
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 9.2e-108 394.4 369 60.7
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 9.2e-108 394.4 376 59.6
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 2.1e-107 393.3 374 59.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.7e-107 392.9 376 59.3
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 6.0e-107 391.7 369 59.9
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.0e-106 391.0 348 60.1
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.3e-106 389.8 376 58.8
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 5.1e-106 388.7 376 58.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.5e-105 387.1 372 60.5
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.9e-105 386.7 372 59.9
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.2e-104 384.0 374 59.1
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 2.8e-104 382.9 375 58.4
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 4.7e-104 382.1 374 58.0
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 6.2e-104 381.7 375 58.1
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.8e-103 380.2 379 57.5
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.4e-103 379.8 338 62.4
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 2.4e-103 379.8 374 56.1
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.1e-103 379.4 375 57.9
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.2e-102 377.5 372 58.6
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.7e-101 373.6 368 59.8
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 1.7e-101 373.6 380 57.4
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.9e-101 372.1 374 57.2
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.1e-100 370.9 374 56.1
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 7.3e-97 358.2 377 56.8
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 7.3e-97 358.2 393 54.2
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.3e-96 357.5 326 59.8
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.6e-96 357.1 274 68.6
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 4.8e-96 355.5 373 53.9
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 4.5e-94 349.0 369 54.2
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 3.2e-92 342.8 373 53.1
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.7e-90 335.1 286 64.0
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.4e-87 327.4 346 57.2
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.4e-87 327.4 346 57.2
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.0e-86 323.6 380 50.3
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.9e-86 321.2 284 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 3.0e-82 309.7 328 52.7
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 7.4e-81 305.1 321 54.2
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 4.8e-80 302.4 373 49.6
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.8e-79 300.4 342 51.5
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.8e-72 276.6 246 57.3
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.2e-68 262.7 169 74.6
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.6e-67 260.8 354 43.5
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.8e-64 249.2 286 52.1
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.1e-63 248.1 286 51.7
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.8e-58 230.7 194 67.5
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 5.5e-52 209.1 220 54.1
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.5e-49 201.1 202 57.9
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 1.2e-41 174.9 352 39.8
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.3e-37 161.4 364 33.2
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.7e-32 143.3 140 60.0
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 1.6e-30 137.9 91 71.4
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.0e-30 137.5 282 35.5
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 7.7e-30 135.6 175 47.4
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 7.7e-30 135.6 130 57.7
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.5e-28 130.6 83 74.7
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 3.6e-27 126.7 167 49.1
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.1e-19 100.9 110 50.9
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 5.4e-15 86.3 66 59.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 7.8e-14 82.4 203 31.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.2e-11 75.1 54 68.5
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 5.2e-10 69.7 50 60.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 6.8e-10 69.3 276 27.5
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.4e-09 67.0 247 24.7
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 2.2e-08 64.3 55 63.6
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.4e-07 61.6 73 49.3
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 4.1e-07 60.1 165 30.3


User provided reference genes

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