Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 2.3e-96 355.9 231 100.0
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.2e-63 247.3 229 60.7
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 2.4e-53 213.0 233 53.2
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 6.0e-52 208.4 233 67.8
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 9.6e-34 147.9 238 40.8
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 5.8e-31 138.7 226 37.6
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.3e-30 137.5 231 37.7
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 2.2e-30 136.7 232 37.5
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 3.2e-29 132.9 230 40.4
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 7.1e-29 131.7 238 40.8
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 3.0e-27 126.3 263 33.1
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 8.7e-27 124.8 221 34.8
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 1.1e-26 124.4 238 39.1
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 7.4e-26 121.7 228 35.1
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 3.1e-24 116.3 236 32.2
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 1.2e-23 114.4 231 34.2
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 1.5e-23 114.0 229 36.2
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 2.6e-23 113.2 242 37.2
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 4.5e-23 112.5 229 32.3
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 2.2e-22 110.2 226 33.6
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 3.8e-22 109.4 231 31.2
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 4.9e-22 109.0 229 35.4
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 6.4e-22 108.6 229 34.1
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 2.5e-21 106.7 244 38.5
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 1.6e-20 104.0 229 32.8
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 3.5e-20 102.8 239 31.0
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 4.6e-20 102.4 217 45.6
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.6e-20 102.4 228 33.3
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 4.6e-20 102.4 217 30.9
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 6.0e-20 102.1 223 31.8
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 1.0e-19 101.3 226 29.6
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 1.3e-19 100.9 228 31.1
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 1.3e-19 100.9 260 46.9
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 1.3e-19 100.9 237 44.3
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.8e-19 100.5 228 30.7
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 2.3e-19 100.1 244 45.5
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 2.3e-19 100.1 237 30.0
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 3.9e-19 99.4 245 45.3
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 3.9e-19 99.4 228 31.1
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 3.9e-19 99.4 243 37.4
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 5.1e-19 99.0 228 30.7
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.9e-18 97.1 228 30.7
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 3.7e-17 92.8 245 34.7
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.4e-16 90.1 260 30.4
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 3.1e-16 89.7 215 36.3
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.1e-16 89.7 247 29.6
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 6.9e-16 88.6 248 29.4
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 1.2e-15 87.8 243 29.2
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.2e-14 83.6 240 28.8
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 2.9e-14 83.2 240 33.3
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 3.2e-13 79.7 245 27.3
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 7.1e-13 78.6 243 28.0
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 7.1e-13 78.6 241 28.6
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 7.1e-13 78.6 255 25.5
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 9.3e-13 78.2 255 25.5
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.6e-12 77.4 242 25.2
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.7e-12 76.6 256 28.1
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 6.0e-12 75.5 230 40.0
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 6.0e-12 75.5 243 26.7
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.0e-11 74.7 243 26.7
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.8e-11 73.9 275 25.5
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 1.8e-11 73.9 261 25.3
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 3.9e-11 72.8 235 28.1
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 5.1e-11 72.4 261 26.4
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 6.7e-11 72.0 236 39.4
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 8.7e-11 71.6 256 31.2
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 3.3e-10 69.7 81 46.9
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 4.3e-10 69.3 83 43.4
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 5.7e-10 68.9 239 27.2
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 7.4e-10 68.6 76 43.4
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 7.4e-10 68.6 87 42.5
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 9.7e-10 68.2 84 41.7
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 2.8e-09 66.6 81 43.2
Zm00001eb434190 Zea mays HOM05D007097 ORTHO05D008131 2.8e-09 66.6 240 27.5
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 3.7e-09 66.2 81 43.2
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.3e-09 65.5 79 41.8
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 8.2e-09 65.1 84 42.9
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 1.4e-08 64.3 258 29.8
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 2.4e-08 63.5 219 26.9
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 4.1e-08 62.8 228 27.2
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.1e-08 62.8 84 44.0
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 5.3e-08 62.4 237 25.7
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 1.2e-07 61.2 229 24.9
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 3.4e-07 59.7 90 36.7
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 7.7e-07 58.5 75 40.0
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 1.0e-06 58.2 233 24.9
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 1.7e-06 57.4 255 23.1
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 2.2e-06 57.0 76 40.8
VMungo0838G0001 Vigna mungo HOM05D007097 ORTHO05D008131 2.2e-06 57.0 150 45.3


User provided reference genes

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