Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.8e-145 519.2 261 100.0
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 8.9e-145 516.9 261 99.2
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.0e-144 515.8 261 98.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 9.8e-144 513.5 261 98.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.2e-143 512.3 261 98.1
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.9e-143 511.9 261 98.1
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 3.7e-143 511.5 261 97.7
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.6e-141 506.1 261 96.6
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.5e-141 505.0 261 96.2
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.5e-141 505.0 261 96.2
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 2.3e-140 502.3 261 95.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.2e-138 496.5 261 94.3
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 92.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 93.1
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 92.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 91.6
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.3
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 92.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 92.3
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 91.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 92.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.6
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.6
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 91.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.4
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.7e-133 478.8 260 91.2
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.8
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 3.5e-133 478.4 260 90.8
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.8
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.2
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.2
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.4
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.8
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.4
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.4
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 91.2
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.0
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.8
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.3e-132 475.7 258 91.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.4
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.3
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.8
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.4
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.8
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 3.9e-132 474.9 260 91.2
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.0
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 6.6e-132 474.2 260 90.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 88.9
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 88.9
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 6.6e-132 474.2 260 90.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.4
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 91.2
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 89.7
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 89.7
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.3
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 87.7
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 89.3
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.9
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.9
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.9
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 9.5e-131 470.3 260 89.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 9.5e-131 470.3 265 87.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.9
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 90.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.4e-129 466.5 259 89.6
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.9
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 88.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.3e-129 465.7 256 89.5
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.0e-129 464.9 260 88.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.0e-129 464.9 260 88.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.9
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.1
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.1
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.5
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 6.8e-129 464.2 285 83.2
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-128 463.4 264 87.9
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.6e-128 462.2 269 86.2
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.8
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 4.4e-128 461.5 259 88.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 4.4e-128 461.5 259 88.4
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 87.0
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 87.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 86.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.7e-127 459.5 260 87.3
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.1
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 85.8
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 85.4
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 87.4
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.2e-126 455.3 276 84.4
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 85.4
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 85.8
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.8e-125 450.7 277 82.7
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.0e-124 450.3 260 86.2
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 85.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 84.3
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 82.8
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 82.0
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 8.1e-122 440.7 256 84.0
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.0e-121 438.3 240 90.4
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 83.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.4e-118 429.1 241 88.0
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.1e-118 427.6 241 87.6
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 80.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.1e-114 416.0 261 80.1
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.1e-113 413.7 261 82.0
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 9.0e-113 410.6 261 73.6
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.4e-112 408.7 261 77.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.3e-111 406.8 266 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 6.4e-111 404.4 261 77.4
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 5.4e-110 401.4 213 91.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.7e-109 399.1 261 78.9
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.3e-107 391.0 261 77.4
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 2.8e-106 389.0 222 86.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.1e-106 387.5 337 62.9
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 8.1e-106 387.5 201 93.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.4e-105 386.7 254 77.2
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 2.4e-105 386.0 240 80.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.3e-105 384.8 309 69.3
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-101 372.9 195 91.8
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.1e-100 368.2 200 90.5
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.3e-92 342.8 256 72.3
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.1e-89 332.4 260 62.7
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.5e-88 328.6 177 88.7
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.6e-82 310.1 161 91.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 3.8e-71 272.3 229 59.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 5.5e-70 268.5 240 61.2
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 3.7e-58 229.2 142 83.1
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.1e-57 227.6 143 81.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.1e-57 227.6 113 95.6
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.2e-56 224.2 135 85.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 4.1e-49 199.1 98 93.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 5.2e-44 182.2 270 47.0
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-43 180.6 109 82.6
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.2e-42 176.8 196 53.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 4.5e-40 169.1 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.1e-38 164.5 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-37 161.0 92 84.8
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 5.2e-36 155.6 100 83.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.4e-35 152.5 195 48.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.7e-29 132.5 81 81.5
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.8e-28 130.6 91 71.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.0e-24 115.5 111 60.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.9e-18 96.7 64 75.0
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.8e-13 80.1 81 56.8
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.1e-09 68.2 44 81.8
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.1e-09 68.2 56 64.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 9.2e-09 65.1 62 58.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.6e-08 64.3 59 57.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 52 67.3
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-07 61.2 38 73.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.0e-07 60.1 34 82.4
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 4.3e-06 56.2 35 71.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 5.6e-06 55.8 34 76.5


User provided reference genes

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