Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.7e-151 539.3 267 100.0
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 5.3e-137 491.1 267 92.9
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 3.5e-112 408.7 267 78.3
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 2.9e-111 405.6 268 77.6
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 3.5e-96 355.5 280 69.3
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.3e-94 348.6 278 70.5
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 5.6e-94 348.2 274 70.1
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 8.4e-90 334.3 281 65.5
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 6.6e-87 324.7 277 66.1
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 8.6e-87 324.3 267 65.9
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 2.0e-83 313.2 307 60.3
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 5.1e-79 298.5 276 58.7
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 9.0e-76 287.7 264 58.7
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.2e-75 287.3 270 54.4
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 1.5e-75 287.0 268 56.7
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 9.9e-75 284.3 275 58.5
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 2.9e-74 282.7 277 56.7
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.9e-74 282.0 276 52.9
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 8.4e-74 281.2 271 57.6
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.4e-73 280.4 278 56.5
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.4e-73 280.4 269 56.5
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 1.4e-73 280.4 278 57.2
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 7.1e-73 278.1 268 53.4
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 1.6e-72 276.9 275 56.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.6e-72 276.9 278 57.2
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 2.7e-72 276.2 279 55.9
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 3.5e-72 275.8 275 54.9
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 4.6e-72 275.4 269 57.2
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 4.6e-72 275.4 276 54.0
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 6.0e-72 275.0 276 56.2
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.0e-71 274.2 274 55.5
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.0e-71 272.7 271 56.1
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.9e-71 272.3 278 55.0
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 8.7e-71 271.2 266 55.6
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.1e-70 270.8 273 53.8
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 1.1e-70 270.8 266 56.0
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 2.5e-70 269.6 277 55.6
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.3e-70 268.1 266 56.8
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.1e-69 266.5 269 55.8
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 6.2e-69 265.0 284 53.2
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-68 264.2 269 52.0
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.4e-68 263.8 267 56.6
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 5.3e-68 261.9 275 51.6
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.9e-68 261.5 261 55.2
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 9.0e-68 261.2 274 52.9
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.6e-67 259.6 275 52.4
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 3.4e-67 259.2 216 60.2
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.3e-66 257.3 272 52.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.3e-66 257.3 205 60.0
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.3e-66 257.3 267 50.6
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 2.2e-66 256.5 273 51.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.9e-66 256.1 191 67.5
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 3.8e-66 255.8 201 58.2
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 3.8e-66 255.8 265 51.7
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 8.4e-66 254.6 265 51.3
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 8.4e-66 254.6 266 52.3
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 3.2e-65 252.7 202 68.3
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 7.1e-65 251.5 266 50.8
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 7.1e-65 251.5 211 61.1
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.2e-64 250.8 253 52.6
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 2.7e-64 249.6 211 60.7
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 2.7e-64 249.6 211 60.7
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 3.5e-64 249.2 294 51.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 4.6e-64 248.8 265 50.9
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 4.6e-64 248.8 268 49.3
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 6.0e-64 248.4 266 49.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 6.0e-64 248.4 209 58.4
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 6.0e-64 248.4 291 49.5
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 7.9e-64 248.1 269 53.5
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.8e-63 246.9 202 61.4
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.8e-63 246.9 178 68.0
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 2.3e-63 246.5 202 60.9
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 3.9e-63 245.7 265 49.4
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 5.1e-63 245.4 211 58.3
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 5.1e-63 245.4 276 51.4
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 1.5e-62 243.8 199 63.8
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 3.3e-62 242.7 269 48.0
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 4.3e-62 242.3 270 48.9
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 9.6e-62 241.1 269 50.2
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 1.3e-61 240.7 267 50.2
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.3e-61 240.7 201 61.7
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.3e-61 240.7 279 48.0
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 2.1e-61 240.0 256 52.3
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 9.0e-60 234.6 262 51.1
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.6e-59 233.0 204 58.8
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 4.5e-59 232.3 277 53.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 3.8e-58 229.2 213 54.9
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.4e-57 227.3 220 56.8
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 2.5e-57 226.5 204 55.9
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 1.6e-56 223.8 190 59.5
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 2.1e-56 223.4 317 44.2
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 7.9e-56 221.5 268 46.3
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 7.4e-54 214.9 167 63.5
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 4.1e-52 209.1 172 61.0
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 6.9e-52 208.4 154 68.8
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 6.9e-52 208.4 159 64.8
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.0e-50 204.5 147 70.7
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 3.2e-49 199.5 202 55.4
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 7.2e-49 198.4 154 64.9
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 7.2e-49 198.4 153 66.7
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 6.1e-48 195.3 177 54.2
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 5.1e-47 192.2 189 55.0
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 5.1e-47 192.2 190 47.9
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.1e-46 191.0 177 59.3
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.3e-45 187.6 201 49.3
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.2e-45 186.8 177 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.4e-44 184.1 206 44.7
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.7e-40 169.9 203 44.3
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 8.8e-39 164.9 190 51.6
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 9.1e-36 154.8 115 67.0
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.0e-34 151.4 272 39.3
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 3.0e-31 139.8 190 41.1
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 3.9e-31 139.4 197 40.1
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 3.1e-28 129.8 108 68.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.7e-24 116.7 178 44.9
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.3e-23 113.6 238 32.8
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.3e-23 113.6 238 32.8
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 3.5e-19 99.8 123 36.6
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 6.1e-16 89.0 107 48.6
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 4.4e-14 82.8 159 34.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 1.3e-13 81.3 223 26.5
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 2.9e-10 70.1 99 44.4
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 1.0e-07 61.6 123 34.1
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 1.5e-06 57.8 58 51.7


User provided reference genes

Program Settings