Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 4.0e-142 508.1 250 100.0
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 7.3e-88 327.8 241 70.1
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 7.6e-85 317.8 244 66.0
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 2.1e-82 309.7 249 66.3
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 2.1e-79 299.7 247 63.6
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 6.4e-76 288.1 249 57.4
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 1.4e-75 287.0 256 59.4
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 3.9e-73 278.9 206 67.5
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 1.2e-66 257.3 245 53.5
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 2.1e-66 256.5 243 52.3
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 6.0e-66 255.0 252 53.2
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 1.3e-63 247.3 271 48.3
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 3.7e-63 245.7 272 49.3
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 3.7e-63 245.7 249 52.6
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 6.9e-62 241.5 248 50.0
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 9.0e-62 241.1 244 52.9
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.0e-60 237.7 238 50.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.3e-60 237.3 243 51.0
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 1.3e-60 237.3 243 51.0
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 1.7e-60 236.9 253 49.0
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 1.7e-60 236.9 257 49.0
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 2.9e-60 236.1 253 49.0
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 4.9e-60 235.3 243 50.2
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 2.5e-59 233.0 250 50.8
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 4.2e-59 232.3 245 51.4
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 5.5e-59 231.9 244 50.0
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 5.5e-59 231.9 246 50.0
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 9.3e-59 231.1 246 50.8
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 7.9e-58 228.0 256 46.5
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.0e-57 227.6 241 49.4
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 1.8e-57 226.9 264 47.0
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 2.3e-57 226.5 259 45.6
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 3.0e-57 226.1 212 52.4
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 1.5e-56 223.8 251 48.6
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.5e-56 223.8 252 46.8
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 4.3e-56 222.2 246 49.6
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 9.6e-56 221.1 246 49.2
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 1.6e-55 220.3 241 48.1
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 2.8e-55 219.5 218 51.4
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.8e-55 219.5 247 49.4
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 3.7e-55 219.2 247 50.2
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 3.7e-55 219.2 249 49.0
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 3.7e-55 219.2 239 48.5
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 1.4e-54 217.2 249 47.8
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.1e-54 216.1 247 49.8
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.1e-54 215.7 247 48.6
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 4.5e-53 212.2 264 42.8
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 1.7e-52 210.3 246 48.4
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 2.2e-52 209.9 265 42.6
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 2.9e-52 209.5 256 44.1
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 5.0e-52 208.8 246 45.5
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 1.2e-50 204.1 245 46.9
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.7e-50 203.0 226 49.1
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.7e-50 203.0 236 47.9
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 7.9e-50 201.4 248 45.6
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 8.7e-49 198.0 255 45.1
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 1.3e-47 194.1 249 46.2
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.8e-46 190.3 252 41.7
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 5.3e-46 188.7 247 44.5
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 4.5e-45 185.7 264 40.5
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.2e-44 183.3 224 47.8
Haze_19770 Corylus avellana HOM05D007529 ORTHO05D007451 7.2e-43 178.3 163 52.8
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 7.9e-42 174.9 258 41.5
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 3.3e-40 169.5 208 45.7
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 4.4e-40 169.1 250 40.0
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 7.4e-40 168.3 258 40.3
Nn1g04791 Nelumbo nucifera HOM05D007529 ORTHO05D007451 4.8e-39 165.6 244 41.0
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 4.1e-38 162.5 183 48.6
Sabra04G0050900 Salix brachista HOM05D007529 ORTHO05D007451 1.2e-37 161.0 227 38.3
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 1.3e-36 157.5 140 62.9
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 5.0e-36 155.6 255 37.3
CiPaw.09G042800 Carya illinoinensis HOM05D007529 ORTHO05D007451 6.5e-36 155.2 245 42.0
Aqoxy7G01198 Aquilegia oxysepala HOM05D007529 ORTHO05D007451 8.5e-36 154.8 217 40.1
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 3.2e-35 152.9 252 40.9
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 2.7e-34 149.8 244 37.3
FvH4_2g38461 Fragaria vesca HOM05D007529 ORTHO05D007451 4.7e-34 149.1 184 47.3
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 8.8e-33 144.8 124 59.7
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 2.0e-29 133.7 264 37.9
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 3.5e-29 132.9 258 33.3
Potri.004G077301 Populus trichocarpa HOM05D007529 ORTHO05D007451 2.7e-26 123.2 180 37.2
Nn1g01084 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.3e-25 120.2 106 58.5
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 4.0e-25 119.4 249 32.9
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 3.3e-24 116.3 251 33.5
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 4.4e-24 115.9 171 40.9
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 4.8e-23 112.5 251 32.7
unitig_899.g15088 Utricularia gibba HOM05D007529 ORTHO05D007451 8.2e-23 111.7 191 39.3
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 1.1e-22 111.3 250 33.2
Nitab4.5_0000826g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 4.1e-22 109.4 105 50.5
FAN12G3498 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.9e-21 105.5 162 39.5
AUR62026141 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.1e-19 101.3 133 41.4
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.5e-19 100.9 276 31.9
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 5.5e-19 99.0 252 32.9
FvH4_4g15602 Fragaria vesca HOM05D007529 ORTHO05D007451 1.0e-17 94.7 162 37.7
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 6.8e-17 92.0 94 51.1
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 8.8e-17 91.7 248 27.8
CDE11G0566 Ceratophyllum demersum HOM05D007529 ORTHO05D007451 1.2e-16 91.3 172 27.9
ClCG04G003940 Citrullus lanatus HOM05D007529 ORTHO05D007451 1.5e-16 90.9 78 55.1
CsaV3_4G021970 Cucumis sativus L. HOM05D007529 ORTHO05D007451 2.0e-16 90.5 78 53.8
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 3.4e-16 89.7 248 27.8
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 3.4e-16 89.7 248 27.8
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 3.4e-16 89.7 247 27.5
THA.LOC104825174 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 4.4e-16 89.4 134 37.3
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 9.8e-16 88.2 268 29.1
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 9.8e-16 88.2 249 28.5
Glyma.20G106000 Glycine max HOM05D007529 ORTHO05D007451 9.8e-16 88.2 54 77.8
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 2.2e-15 87.0 248 25.8
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 2.2e-15 87.0 248 27.4
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 2.2e-15 87.0 248 25.8
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 3.7e-15 86.3 248 26.6
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 3.7e-15 86.3 248 26.6
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 8.3e-15 85.1 258 27.1
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 1.1e-14 84.7 248 27.0
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.1e-14 84.7 250 28.0
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 1.4e-14 84.3 250 28.0
MELO3C014210.2 Cucumis melo HOM05D007529 ORTHO05D007451 2.4e-14 83.6 77 51.9
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 4.1e-14 82.8 248 27.0
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 4.1e-14 82.8 248 27.0
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 4.1e-14 82.8 252 26.6
Cpa.g.sc5.217 Carica papaya HOM05D007529 ORTHO05D007451 5.4e-14 82.4 74 50.0
FAN22G2112 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.6e-13 80.9 89 49.4
SEGI_22599 Sequoiadendron giganteum HOM05D007529 ORTHO05D007451 1.6e-13 80.9 256 28.9
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.5e-13 79.7 99 46.5
Cpa.g.sc5.218 Carica papaya HOM05D007529 ORTHO05D007451 4.5e-13 79.3 70 51.4
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 4.5e-13 79.3 251 25.9
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 5.0e-12 75.9 185 28.6
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 5.0e-12 75.9 185 28.1
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 8.6e-12 75.1 155 31.0
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 1.1e-11 74.7 299 27.8
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 1.2e-10 71.2 185 28.6
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 1.6e-10 70.9 154 29.9
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 2.3e-09 67.0 185 27.0


User provided reference genes

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