Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 2.0e-97 359.0 170 100.0
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 4.5e-65 251.5 173 72.8
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.0e-61 238.4 174 71.8
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.5e-47 193.4 183 60.7
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 6.8e-45 184.5 173 57.8
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.2e-43 179.5 195 49.7
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 2.9e-43 179.1 203 49.3
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 2.9e-43 179.1 203 49.3
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 5.4e-42 174.9 198 51.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 6.0e-41 171.4 192 46.9
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 1.5e-39 166.8 181 50.3
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.5e-39 166.8 196 50.5
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.5e-39 166.8 191 47.6
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.3e-39 165.6 156 53.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.6e-39 164.9 192 48.4
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 9.5e-39 164.1 190 47.9
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.5e-39 164.1 150 54.7
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.2e-38 161.4 199 46.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.1e-38 161.0 136 58.1
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.8e-37 159.8 186 47.8
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.3e-37 159.5 198 44.4
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.3e-37 159.5 211 44.1
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.1e-37 159.1 181 47.5
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.1e-37 159.1 192 47.4
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 8.9e-37 157.5 193 46.1
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 8.9e-37 157.5 150 56.7
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-36 157.1 199 45.2
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.4e-36 155.6 174 49.4
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.4e-36 155.6 213 42.3
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 3.4e-36 155.6 182 48.4
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 7.5e-36 154.5 151 54.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 7.5e-36 154.5 198 44.4
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 7.5e-36 154.5 176 47.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-35 151.4 184 47.8
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 8.3e-35 151.0 147 55.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.1e-34 150.6 137 56.9
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.4e-34 150.2 126 57.1
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.9e-34 149.8 141 58.2
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.2e-34 149.1 101 67.3
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 5.4e-34 148.3 184 44.6
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 5.4e-34 148.3 195 46.7
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 7.1e-34 147.9 125 56.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 7.1e-34 147.9 178 48.9
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 9.2e-34 147.5 193 46.1
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.2e-33 147.1 115 61.7
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.6e-33 146.7 193 46.1
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.6e-33 146.7 197 44.2
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.8e-33 144.4 202 42.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 7.8e-33 144.4 118 59.3
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.8e-33 144.4 147 52.4
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.3e-32 142.9 127 56.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.0e-32 142.5 199 44.2
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 3.9e-32 142.1 183 43.2
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.1e-31 140.6 132 54.5
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.1e-31 140.6 130 56.2
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.9e-31 139.8 201 42.3
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 2.5e-31 139.4 119 58.8
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 2.5e-31 139.4 137 51.8
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 3.3e-31 139.0 147 50.3
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 7.3e-31 137.9 194 43.3
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 7.3e-31 137.9 84 72.6
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 7.3e-31 137.9 130 55.4
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 7.3e-31 137.9 135 54.1
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.5e-31 137.5 107 63.6
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-30 137.1 123 54.5
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.2e-30 137.1 167 47.9
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.1e-30 136.3 127 54.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.1e-30 136.3 136 53.7
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.1e-30 136.3 184 45.1
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 4.7e-30 135.2 123 55.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.2e-30 134.8 129 55.0
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 8.1e-30 134.4 203 43.8
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-29 134.0 182 42.3
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.4e-29 133.7 136 53.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.4e-29 133.7 130 53.8
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.4e-29 133.7 86 73.3
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.8e-29 133.3 129 55.0
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.1e-29 132.5 129 53.5
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 3.1e-29 132.5 184 41.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 4.0e-29 132.1 157 47.1
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 8.9e-29 131.0 129 54.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 2.0e-28 129.8 126 53.2
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-28 129.8 94 62.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.0e-28 129.8 115 58.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.6e-28 129.4 91 63.7
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 3.4e-28 129.0 146 49.3
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.6e-28 127.9 84 71.4
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 7.6e-28 127.9 132 51.5
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-27 127.1 84 70.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-27 127.1 114 57.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-27 125.9 84 70.2
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.8e-27 125.6 169 43.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.9e-27 125.2 188 42.0
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-27 124.8 144 49.3
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-27 124.8 144 49.3
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.9e-26 123.2 131 54.2
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.2e-26 122.5 129 52.7
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 3.2e-26 122.5 177 40.7
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.1e-26 122.1 84 67.9
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.1e-26 121.3 124 53.2
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 9.2e-26 120.9 170 42.4
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-25 120.2 131 53.4
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.1e-25 119.8 111 54.1
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.0e-24 117.5 135 48.1
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.3e-24 117.1 155 45.8
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.7e-24 116.7 155 46.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.1e-24 115.2 86 60.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.1e-24 115.2 86 60.5
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.5e-23 113.6 195 40.5
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-23 112.8 86 58.1
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.5e-23 112.8 86 58.1
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.5e-23 112.8 86 58.1
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 4.3e-23 112.1 122 50.8
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.2e-22 110.5 134 47.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-22 110.5 129 47.3
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.2e-22 110.5 195 41.5
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.6e-22 110.2 146 49.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.1e-22 109.8 143 47.6
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 8.1e-22 107.8 190 42.1
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 2.4e-21 106.3 146 43.8
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.1e-21 105.9 170 39.4
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.2e-20 104.0 136 41.9
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.5e-20 103.6 196 38.3
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.0e-20 103.2 154 39.0
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 4.4e-20 102.1 84 56.0
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 4.4e-20 102.1 84 56.0
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.4e-20 102.1 119 51.3
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 7.6e-20 101.3 125 44.8
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 7.6e-20 101.3 125 44.8
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.6e-20 101.3 163 36.8
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 9.9e-20 100.9 129 43.4
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-19 100.1 128 43.8
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.7e-19 100.1 128 43.8
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.7e-19 100.1 134 42.5
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.2e-19 99.8 145 42.1
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-19 97.8 126 43.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-19 97.8 133 42.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 8.4e-19 97.8 133 42.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-18 97.4 84 56.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-18 96.7 128 42.2
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.9e-18 96.7 128 42.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.4e-18 96.3 125 44.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 4.2e-18 95.5 143 41.3
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 3.5e-17 92.4 126 42.1
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.0e-17 91.7 195 33.8
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-16 90.5 146 39.0
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.3e-16 90.5 146 39.0
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.7e-16 90.1 163 35.0
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.9e-16 89.0 136 38.2
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 3.9e-16 89.0 179 38.5
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 7.3e-15 84.7 167 32.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.6e-14 83.6 59 64.4
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 6.2e-14 81.6 72 52.8
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.1e-13 80.9 166 30.7
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-13 80.5 128 39.8
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.8e-13 80.1 122 39.3
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.4e-13 79.7 81 51.9
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 9.0e-13 77.8 131 41.2
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 9.9e-12 74.3 84 46.4
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 2.4e-10 69.7 136 38.2
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 7.1e-10 68.2 84 42.9
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.7e-09 66.2 84 42.9
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 7.9e-09 64.7 116 37.9
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.5e-07 59.7 117 35.9
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.3e-07 59.3 117 36.8
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 3.7e-06 55.8 182 29.7
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 6.2e-06 55.1 149 29.5


User provided reference genes

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