Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 8.3e-64 246.9 126 100.0
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 2.0e-54 215.7 126 84.9
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 1.6e-38 162.9 132 64.4
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 3.9e-37 158.3 125 65.6
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 7.1e-23 110.9 138 50.7
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 6.0e-22 107.8 140 47.9
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 7.8e-22 107.5 148 47.3
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 3.9e-21 105.1 136 44.9
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 8.7e-21 104.0 143 46.9
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.9e-20 102.8 130 46.2
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 1.9e-20 102.8 128 50.8
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 1.6e-19 99.8 138 47.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 4.0e-18 95.1 129 46.5
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 1.6e-14 83.2 143 37.8
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 3.5e-14 82.0 119 43.7
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 7.9e-14 80.9 120 46.7
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 3.0e-13 79.0 120 40.8
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.9e-13 78.6 114 41.2
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.5e-12 76.6 120 41.7
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 1.9e-12 76.3 130 44.6
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.5e-12 75.9 119 41.2
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 9.6e-12 73.9 123 41.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.6e-12 73.9 119 40.3
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.6e-11 73.2 123 43.9
Glyma.03G204600 Glycine max HOM05D005113 ORTHO05D006045 2.1e-11 72.8 121 40.5
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.1e-11 72.8 118 44.1
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 6.2e-11 71.2 117 42.7
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.4e-10 70.1 118 40.7
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.4e-10 69.3 116 36.2
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 3.1e-10 68.9 116 38.8
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 3.1e-10 68.9 119 43.7
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 5.3e-10 68.2 110 42.7
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.3e-10 68.2 116 36.2
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 6.9e-10 67.8 118 38.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 9.0e-10 67.4 129 39.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 1.5e-09 66.6 120 39.2
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 7.6e-09 64.3 115 36.5
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 9.9e-09 63.9 119 34.5
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.7e-08 63.2 127 36.2
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.7e-08 63.2 132 36.4
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.7e-08 63.2 132 36.4
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 1.7e-08 63.2 120 36.7
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.7e-08 63.2 121 37.2
VMungo1383G0003 Vigna mungo HOM05D005113 ORTHO05D006045 2.2e-08 62.8 130 39.2
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 2.9e-08 62.4 114 36.8
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 2.9e-08 62.4 132 36.4
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 3.8e-08 62.0 115 36.5
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 3.8e-08 62.0 111 37.8
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.8e-08 62.0 125 36.8
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 4.9e-08 61.6 126 36.5
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 4.9e-08 61.6 136 37.5
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 4.9e-08 61.6 123 33.3
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 6.4e-08 61.2 132 35.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.4e-08 61.2 133 35.3
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.4e-08 61.2 132 35.6
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.4e-08 61.2 123 36.6
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.1e-07 60.5 132 35.6
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 1.9e-07 59.7 121 35.5
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.4e-07 59.3 127 38.6
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 2.4e-07 59.3 117 36.8
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.2e-07 58.9 73 47.9
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.2e-07 58.9 120 35.0
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 3.2e-07 58.9 122 35.2
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.2e-07 58.9 62 51.6
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 4.2e-07 58.5 116 36.2
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 5.5e-07 58.2 72 47.2
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 5.5e-07 58.2 63 52.4
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 5.5e-07 58.2 121 38.8
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 5.5e-07 58.2 122 32.8
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 5.5e-07 58.2 122 32.8
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.5e-07 58.2 63 49.2
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.2e-06 57.0 63 55.6
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.2e-06 57.0 124 35.5
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.2e-06 57.0 62 48.4
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.6e-06 56.6 126 33.3
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.1e-06 56.2 63 54.0
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 2.1e-06 56.2 113 38.9
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 2.1e-06 56.2 113 37.2
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.1e-06 56.2 84 42.9
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 2.7e-06 55.8 129 34.9
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.7e-06 55.8 75 48.0
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.5e-06 55.5 63 54.0
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 4.6e-06 55.1 122 37.7
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 6.0e-06 54.7 63 54.0
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 6.0e-06 54.7 73 45.2
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 7.9e-06 54.3 134 33.6
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 7.9e-06 54.3 121 33.1


User provided reference genes

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