Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G184400 Glycine max HOM05D002511 ORTHO05D023230 1.5e-49 199.1 97 100.0
arahy.Tifrunner.gnm1.ann1.KIW01B Arachis hypogaea HOM05D002511 ORTHO05D003982 3.5e-14 81.6 91 52.7
Lalb_Chr05g0222041 Lupinus albus HOM05D002511 ORTHO05D003982 4.6e-14 81.3 52 78.8
Glyma.08G048800 Glycine max HOM05D002511 ORTHO05D003982 6.0e-14 80.9 46 84.8
Phvul.002G324700 Phaseolus vulgaris HOM05D002511 ORTHO05D003982 6.0e-14 80.9 46 84.8
VMungo0251G1627 Vigna mungo HOM05D002511 ORTHO05D003982 6.0e-14 80.9 46 84.8
Glyma.05G241500 Glycine max HOM05D002511 ORTHO05D003982 1.8e-13 79.3 46 82.6
arahy.Tifrunner.gnm1.ann1.51XJUZ Arachis hypogaea HOM05D002511 ORTHO05D003982 3.9e-13 78.2 52 76.9
Lj4g0013237 Lotus japonicus HOM05D002511 ORTHO05D003982 3.9e-13 78.2 52 76.9
Lalb_Chr16g0387381 Lupinus albus HOM05D002511 ORTHO05D003982 3.9e-13 78.2 52 76.9
Lalb_Chr09g0330731 Lupinus albus HOM05D002511 ORTHO05D003982 8.7e-13 77.0 52 75.0
Ca_30368_v3 Cicer arietinum L. HOM05D002511 ORTHO05D003982 1.1e-12 76.6 52 75.0
Psat7g004760 Pisum sativum HOM05D002511 ORTHO05D003982 1.1e-12 76.6 52 75.0
Medtr2g067250 Medicago truncatula HOM05D002511 ORTHO05D003982 1.9e-12 75.9 52 73.1
Medtr8g106120 Medicago truncatula HOM05D002511 ORTHO05D003982 3.3e-12 75.1 52 71.2
Cfa014923 Carpinus fangiana HOM05D002511 ORTHO05D003982 1.1e-10 70.1 81 44.4
CiPaw.01G122300 Carya illinoinensis HOM05D002511 ORTHO05D003982 1.1e-10 70.1 81 44.4
Haze_11600 Corylus avellana HOM05D002511 ORTHO05D003982 1.1e-10 70.1 81 44.4
QL06p024292 Quercus lobata HOM05D002511 ORTHO05D003982 1.1e-10 70.1 81 44.4
AT2G32730 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 2.4e-10 68.9 52 65.4
CARHR126620 Cardamine hirsuta HOM05D002511 ORTHO05D003982 2.4e-10 68.9 52 63.5
TPR.G12873 Trifolium pratense HOM05D002511 ORTHO05D003982 3.1e-10 68.6 52 67.3
Cpa.g.sc59.130 Carica papaya HOM05D002511 ORTHO05D003982 4.1e-10 68.2 52 63.5
CiPaw.02G066800 Carya illinoinensis HOM05D002511 ORTHO05D003982 5.3e-10 67.8 81 43.2
AL4G28170 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 9.0e-10 67.0 52 63.5
Carub.0004s1409 Capsella rubella HOM05D002511 ORTHO05D003982 9.0e-10 67.0 52 63.5
ECA233G0877 Erigeron canadensis HOM05D002511 ORTHO05D003982 9.0e-10 67.0 52 63.5
Aa31LG5G4390 Aethionema arabicum HOM05D002511 ORTHO05D003982 1.2e-09 66.6 52 63.5
CARHR004210 Cardamine hirsuta HOM05D002511 ORTHO05D003982 1.2e-09 66.6 81 43.2
HanXRQChr07g0185721 Helianthus annuus HOM05D002511 ORTHO05D003982 1.2e-09 66.6 52 63.5
Lj3A421G12 Lonicera japonica HOM05D002511 ORTHO05D003982 1.2e-09 66.6 55 58.2
ClCG06G007710 Citrullus lanatus HOM05D002511 ORTHO05D003982 3.4e-09 65.1 78 43.6
Ciclev10004239m.g Citrus clementina HOM05D002511 ORTHO05D003982 3.4e-09 65.1 52 61.5
AL1G14530 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 5.9e-09 64.3 52 61.5
Carub.0001s0406 Capsella rubella HOM05D002511 ORTHO05D003982 5.9e-09 64.3 52 61.5
Thhalv10006675m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 5.9e-09 64.3 52 61.5
THA.LOC104801046 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 5.9e-09 64.3 51 62.7
CsaV3_2G011480 Cucumis sativus L. HOM05D002511 ORTHO05D003982 7.6e-09 63.9 78 42.3
HanXRQChr02g0058871 Helianthus annuus HOM05D002511 ORTHO05D003982 7.6e-09 63.9 52 61.5
Sed0001273 Sechium edule HOM05D002511 ORTHO05D003982 7.6e-09 63.9 49 65.3
Peaxi162Scf00047g00633 Petunia axillaris HOM05D002511 ORTHO05D003982 1.0e-08 63.5 51 60.8
Potri.001G314300 Populus trichocarpa HOM05D002511 ORTHO05D003982 1.0e-08 63.5 52 61.5
SGA_v2.0_scaffold410G51125 Striga asiatica HOM05D002511 ORTHO05D003982 1.0e-08 63.5 53 54.7
CANSAT78G0567 Cannabis sativa HOM05D002511 ORTHO05D003982 1.3e-08 63.2 52 65.4
MELO3C020453.2 Cucumis melo HOM05D002511 ORTHO05D003982 1.3e-08 63.2 78 42.3
MD15G1407100 Malus domestica HOM05D002511 ORTHO05D003982 1.7e-08 62.8 78 42.3
Atru.chr4.1717 Acer truncatum HOM05D002511 ORTHO05D003982 2.2e-08 62.4 52 59.6
AT1G04810 Arabidopsis thaliana HOM05D002511 ORTHO05D003982 2.9e-08 62.0 81 40.7
BcaB06g28630 Brassica carinata HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
BcaC02g07888 Brassica carinata HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
A03p18290 Brassica napus HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
A04p25270 Brassica napus HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
C03p21340 Brassica napus HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
C04p62330 Brassica napus HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
BolC3t14517H Brassica oleracea HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
BolC4t27706H Brassica oleracea HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
BraA03t11089Z Brassica rapa HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
BraA04t18030Z Brassica rapa HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
Thhalv10016177m.g Eutrema salsugineum HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
Sabra16G0198800 Salix brachista HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
Sp4g15070 Schrenkiella parvula HOM05D002511 ORTHO05D003982 2.9e-08 62.0 52 59.6
Actinidia39965 Actinidia chinensis HOM05D002511 ORTHO05D003982 3.8e-08 61.6 51 60.8
A05p12870 Brassica napus HOM05D002511 ORTHO05D003982 3.8e-08 61.6 48 60.4
MD04G1006300 Malus domestica HOM05D002511 ORTHO05D003982 3.8e-08 61.6 51 56.9
THA.LOC104826112 Tarenaya hassleriana HOM05D002511 ORTHO05D003982 5.0e-08 61.2 51 60.8
TWI53G1146 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 5.0e-08 61.2 52 57.7
BcaB02g10496 Brassica carinata HOM05D002511 ORTHO05D003982 6.5e-08 60.8 52 57.7
C04p16890 Brassica napus HOM05D002511 ORTHO05D003982 6.5e-08 60.8 52 57.7
BolC4t23246H Brassica oleracea HOM05D002511 ORTHO05D003982 6.5e-08 60.8 52 57.7
BraA05t20226Z Brassica rapa HOM05D002511 ORTHO05D003982 6.5e-08 60.8 52 57.7
Migut.N00376 Erythranthe guttata HOM05D002511 ORTHO05D003982 6.5e-08 60.8 51 58.8
TPR.G10133 Trifolium pratense HOM05D002511 ORTHO05D003982 6.5e-08 60.8 38 78.9
TWI73G0115 Tripterygium wilfordii HOM05D002511 ORTHO05D003982 6.5e-08 60.8 52 57.7
MSTRG.9820 Avicennia marina HOM05D002511 ORTHO05D003982 8.5e-08 60.5 51 58.8
CSS0028065 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 8.5e-08 60.5 49 61.2
Duzib212G0245 Durio zibethinus HOM05D002511 ORTHO05D003982 8.5e-08 60.5 53 52.8
Oeu001471.1 Olea europaea HOM05D002511 ORTHO05D003982 8.5e-08 60.5 51 58.8
Oeu006728.1 Olea europaea HOM05D002511 ORTHO05D003982 8.5e-08 60.5 51 58.8
SalBow8G2557 Salvia bowleyana HOM05D002511 ORTHO05D003982 8.5e-08 60.5 51 58.8
PGSC0003DMG400029633 Solanum tuberosum HOM05D002511 ORTHO05D003982 8.5e-08 60.5 51 58.8
SGA_v2.0_scaffold57G20126 Striga asiatica HOM05D002511 ORTHO05D003982 8.5e-08 60.5 53 52.8
Hma1.2p1_1382F.1_g279360 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 1.1e-07 60.1 51 56.9
Hma1.2p1_2176F.1_g316110 Hydrangea macrophylla HOM05D002511 ORTHO05D003982 1.1e-07 60.1 51 56.9
Nitab4.5_0002428g0010 Nicotiana tabacum HOM05D002511 ORTHO05D003982 1.4e-07 59.7 51 58.8
Oeu021171.1 Olea europaea HOM05D002511 ORTHO05D003982 1.4e-07 59.7 45 62.2
Prupe.1G554900 Prunus persica HOM05D002511 ORTHO05D003982 1.4e-07 59.7 49 61.2
Actinidia11411 Actinidia chinensis HOM05D002511 ORTHO05D013388 1.9e-07 59.3 51 58.8
Sabra17G0046200 Salix brachista HOM05D002511 ORTHO05D003982 1.9e-07 59.3 52 57.7
Solyc09g091750.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 1.9e-07 59.3 52 55.8
Sopen09g034640 Solanum pennellii HOM05D002511 ORTHO05D003982 1.9e-07 59.3 52 55.8
Gohir.D09G198500 Gossypium hirsutum HOM05D002511 ORTHO05D003982 2.5e-07 58.9 80 38.8
Prupe.1G006500 Prunus persica HOM05D002511 ORTHO05D003982 2.5e-07 58.9 49 61.2
Migut.G00673 Erythranthe guttata HOM05D002511 ORTHO05D003982 3.2e-07 58.5 53 58.5
Dinv38243 Davidia involucrata HOM05D002511 ORTHO05D003982 4.2e-07 58.2 49 59.2
FvH4_4g00680 Fragaria vesca HOM05D002511 ORTHO05D003982 4.2e-07 58.2 50 60.0
FAN12G1391 Fragaria x ananassa HOM05D002511 ORTHO05D003982 4.2e-07 58.2 50 60.0
Gohir.A02G023301 Gossypium hirsutum HOM05D002511 ORTHO05D003982 4.2e-07 58.2 80 38.8
Gohir.D02G123300 Gossypium hirsutum HOM05D002511 ORTHO05D003982 4.2e-07 58.2 51 56.9
Gorai.005G131000 Gossypium raimondii HOM05D002511 ORTHO05D003982 4.2e-07 58.2 51 56.9
Nitab4.5_0003502g0020 Nicotiana tabacum HOM05D002511 ORTHO05D003982 4.2e-07 58.2 51 58.8
SalBow8G2329 Salvia bowleyana HOM05D002511 ORTHO05D023230 4.2e-07 58.2 46 60.9
Solyc05g053650.3 Solanum lycopersicum HOM05D002511 ORTHO05D003982 4.2e-07 58.2 46 65.2
Sopen05g032150 Solanum pennellii HOM05D002511 ORTHO05D003982 4.2e-07 58.2 46 65.2
ATR1145G051 Amborella trichopoda HOM05D002511 ORTHO05D003982 5.5e-07 57.8 46 58.7
DCAR_024479 Daucus carota HOM05D002511 ORTHO05D003982 5.5e-07 57.8 46 65.2
Dinv29588 Davidia involucrata HOM05D002511 ORTHO05D003982 5.5e-07 57.8 52 61.5
Potri.017G054400 Populus trichocarpa HOM05D002511 ORTHO05D003982 5.5e-07 57.8 52 55.8
SalBow3G0794 Salvia bowleyana HOM05D002511 ORTHO05D003982 5.5e-07 57.8 51 56.9
PGSC0003DMG400015761 Solanum tuberosum HOM05D002511 ORTHO05D003982 5.5e-07 57.8 46 65.2
Migut.M00547 Erythranthe guttata HOM05D002511 ORTHO05D003982 7.2e-07 57.4 53 54.7
PGR142G3676 Punica granatum HOM05D002511 ORTHO05D003982 7.2e-07 57.4 49 57.1
SalBow1G0272 Salvia bowleyana HOM05D002511 ORTHO05D023230 7.2e-07 57.4 45 60.0
Aa31LG1G20070 Aethionema arabicum HOM05D002511 ORTHO05D003982 9.3e-07 57.0 52 55.8
MSTRG.4212 Avicennia marina HOM05D002511 ORTHO05D003982 9.3e-07 57.0 51 54.9
CAN.G765.18 Capsicum annuum HOM05D002511 ORTHO05D003982 9.3e-07 57.0 46 65.2
Manes.03G148600 Manihot esculenta HOM05D002511 ORTHO05D003982 9.3e-07 57.0 52 55.8
AL2G18495 Arabidopsis lyrata HOM05D002511 ORTHO05D003982 1.2e-06 56.6 81 37.0
COL.COLO4_10274 Corchorus olitorius HOM05D002511 ORTHO05D003982 1.2e-06 56.6 51 54.9
Duzib268G1285 Durio zibethinus HOM05D002511 ORTHO05D003982 1.2e-06 56.6 51 54.9
FAN17G0170 Fragaria x ananassa HOM05D002511 ORTHO05D003982 1.2e-06 56.6 49 59.2
FAN22G1700 Fragaria x ananassa HOM05D002511 ORTHO05D003982 1.2e-06 56.6 49 59.2
Gohir.D02G030800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.2e-06 56.6 51 54.9
Gorai.005G034100 Gossypium raimondii HOM05D002511 ORTHO05D003982 1.2e-06 56.6 51 54.9
RcHm_v2.0_Chr4g0386391 Rosa chinensis HOM05D002511 ORTHO05D003982 1.2e-06 56.6 49 59.2
Thecc.04G205300 Theobroma cacao HOM05D002511 ORTHO05D003982 1.2e-06 56.6 51 54.9
GSVIVG01026206001 Vitis vinifera HOM05D002511 ORTHO05D003982 1.2e-06 56.6 49 57.1
Gohir.A09G204800 Gossypium hirsutum HOM05D002511 ORTHO05D003982 1.6e-06 56.2 51 54.9
Gorai.006G222100 Gossypium raimondii HOM05D002511 ORTHO05D003982 1.6e-06 56.2 51 54.9
Manes.15G052800 Manihot esculenta HOM05D002511 ORTHO05D003982 1.6e-06 56.2 52 55.8
Nn3g19965 Nelumbo nucifera HOM05D002511 ORTHO05D003982 1.6e-06 56.2 49 57.1
Rhsim02G0056700 Rhododendron simsii HOM05D002511 ORTHO05D003982 2.1e-06 55.8 50 58.0
VMungo0720G0535 Vigna mungo HOM05D002511 ORTHO05D023230 2.1e-06 55.8 35 74.3
Aqoxy5G00076 Aquilegia oxysepala HOM05D002511 ORTHO05D003982 2.7e-06 55.5 55 49.1
Eucgr.H00058 Eucalyptus grandis HOM05D002511 ORTHO05D003982 2.7e-06 55.5 49 55.1
Actinidia35871 Actinidia chinensis HOM05D002511 ORTHO05D023230 3.6e-06 55.1 52 53.8
DCAR_026606 Daucus carota HOM05D002511 ORTHO05D003982 3.6e-06 55.1 52 57.7
Duzib151G0338 Durio zibethinus HOM05D002511 ORTHO05D003982 3.6e-06 55.1 48 56.2
TAR636G1855 Trochodendron aralioides HOM05D002511 ORTHO05D003982 3.6e-06 55.1 42 61.9
Hund22577 Selenicereus undatus HOM05D002511 ORTHO05D003982 4.6e-06 54.7 49 55.1
vmacro15524 Vaccinium macrocarpon HOM05D002511 ORTHO05D003982 4.6e-06 54.7 42 59.5
Gorai.009G349000 Gossypium raimondii HOM05D002511 ORTHO05D003982 6.1e-06 54.3 51 51.0
Os08g0224700 Oryza sativa ssp. japonica HOM05D002511 ORTHO05D003982 6.1e-06 54.3 45 55.6
Thecc.04G205200 Theobroma cacao HOM05D002511 ORTHO05D003982 6.1e-06 54.3 51 52.9
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 7.9e-06 53.9 40 65.0
CSS0036933 Camellia sinensis var. sinensis HOM05D002511 ORTHO05D003982 7.9e-06 53.9 45 57.8
Gohir.A05G322400 Gossypium hirsutum HOM05D002511 ORTHO05D003982 7.9e-06 53.9 52 50.0


User provided reference genes

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