Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.1e-93 345.5 300 100.0
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.6e-68 263.8 301 75.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.8e-61 240.4 301 81.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.0e-55 220.3 301 80.1
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.8e-40 170.6 306 61.1
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.0e-35 154.8 302 58.6
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-34 151.4 315 61.0
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-33 147.9 304 64.1
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.2e-33 147.9 303 58.7
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.6e-33 146.4 310 56.8
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 6.2e-33 145.6 308 56.5
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 8.1e-33 145.2 302 65.6
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.3e-32 143.7 321 59.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.1e-32 143.3 314 58.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.5e-31 141.0 321 59.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.0e-31 140.6 303 66.0
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.0e-31 140.6 307 60.9
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 4.4e-31 139.4 339 57.5
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 5.8e-31 139.0 309 55.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 5.8e-31 139.0 309 55.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.8e-31 139.0 315 58.7
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 9.9e-31 138.3 279 55.6
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.2e-30 137.1 296 65.2
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 2.2e-30 137.1 304 56.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.9e-30 136.7 298 58.7
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.8e-30 136.3 320 54.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 8.4e-30 135.2 313 56.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 8.4e-30 135.2 300 58.3
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.1e-29 134.8 306 57.5
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.2e-29 133.3 225 47.1
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.1e-29 132.9 313 56.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 5.4e-29 132.5 305 57.4
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 5.4e-29 132.5 285 58.9
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 5.4e-29 132.5 242 65.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.4e-29 132.5 306 53.9
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.2e-28 131.3 327 52.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 2.1e-28 130.6 315 56.8
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-28 130.6 294 55.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 3.5e-28 129.8 308 69.5
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 6.0e-28 129.0 310 55.2
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 6.0e-28 129.0 306 46.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 6.0e-28 129.0 310 60.0
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.0e-27 128.3 320 55.6
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.7e-27 127.5 298 56.0
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.3e-27 127.1 219 47.0
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.3e-27 127.1 300 56.7
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.0e-27 126.7 309 58.9
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.0e-27 126.7 227 43.2
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 5.1e-27 125.9 302 57.6
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 6.6e-27 125.6 308 53.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.6e-27 125.2 312 54.8
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.1e-26 124.8 323 55.7
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.5e-26 123.6 312 54.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.5e-26 123.6 303 54.1
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.5e-26 123.6 224 45.1
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.3e-26 123.2 313 55.9
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.3e-26 122.9 284 62.7
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 5.6e-26 122.5 313 53.0
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.6e-26 122.5 314 54.8
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 9.6e-26 121.7 246 63.4
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 9.6e-26 121.7 308 59.1
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.2e-25 121.3 312 55.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.2e-25 121.3 322 55.3
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.6e-25 120.9 307 55.7
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.1e-25 120.6 310 56.5
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.8e-25 120.2 283 55.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 3.6e-25 119.8 288 61.1
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.7e-25 119.4 230 42.6
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 8.1e-25 118.6 335 57.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.1e-24 118.2 285 57.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.1e-24 118.2 285 57.2
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.4e-24 117.9 221 47.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.4e-24 117.9 292 57.5
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-24 117.5 320 52.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.4e-24 117.1 320 52.5
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.1e-24 116.7 206 43.2
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.0e-24 116.3 320 52.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 6.9e-24 115.5 311 54.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.9e-24 115.2 285 56.8
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-23 114.8 306 42.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.2e-23 114.8 288 59.4
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.5e-23 114.4 173 77.5
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.5e-23 114.4 318 53.1
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-23 114.4 318 53.1
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.0e-23 114.0 276 58.0
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 9.9e-23 111.7 296 57.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.3e-22 111.3 211 40.3
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.3e-22 111.3 314 50.0
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-22 111.3 294 59.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.7e-22 110.9 261 66.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-22 110.2 300 54.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.8e-22 109.8 222 42.8
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-21 108.2 223 39.0
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.4e-21 107.8 311 59.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.9e-21 107.5 328 57.0
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.4e-21 107.1 288 50.7
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.2e-21 106.3 287 58.9
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.2e-21 106.3 292 52.7
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 4.2e-21 106.3 282 60.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.4e-21 105.9 309 43.7
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.7e-20 103.6 164 78.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 4.6e-20 102.8 297 53.5
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.8e-20 102.1 293 59.7
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.0e-19 101.7 320 58.4
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.3e-19 100.5 294 58.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.9e-19 99.8 311 50.8
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 3.3e-18 96.7 237 40.1
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.3e-18 96.3 296 51.4
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.6e-18 95.9 309 50.5
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.1e-17 94.0 304 49.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.1e-17 94.0 304 49.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.1e-17 94.0 304 49.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.8e-17 93.6 296 51.7
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 3.6e-17 93.2 311 50.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 4.8e-17 92.8 280 45.4
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 6.2e-17 92.4 298 51.3
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 8.1e-17 92.0 283 53.7
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.1e-16 91.7 302 49.3
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.4e-16 91.3 310 50.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.4e-16 91.3 305 49.8
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 5.3e-16 89.4 152 54.6
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 6.9e-16 89.0 289 44.3
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 9.0e-16 88.6 321 53.9
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-15 88.2 301 47.8
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-15 88.2 212 42.9
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-15 88.2 313 54.0
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.5e-15 87.8 316 49.7
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.0e-15 87.4 248 45.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.0e-15 87.4 277 50.2
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.6e-15 87.0 302 48.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 3.4e-15 86.7 315 41.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.5e-15 86.3 285 47.7
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 7.6e-15 85.5 191 36.1
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 9.9e-15 85.1 280 56.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.3e-14 84.7 302 48.3
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.3e-14 84.7 300 49.7
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.2e-14 84.0 154 41.6
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.9e-14 83.6 308 46.8
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.8e-14 83.2 301 39.5
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.8e-14 83.2 301 39.5
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-14 82.8 302 45.4
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 6.4e-14 82.4 308 46.4
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 8.4e-14 82.0 312 26.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.4e-14 82.0 159 53.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 2.7e-12 77.0 308 47.1
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.7e-12 77.0 301 50.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.5e-12 76.6 310 50.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 3.5e-12 76.6 298 50.7
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.5e-12 76.6 300 49.3
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.5e-12 76.6 332 47.0
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 6.7e-11 72.4 298 48.0
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 6.7e-11 72.4 227 36.6
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.9e-10 70.9 230 37.4
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.9e-10 70.9 301 47.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.5e-10 70.5 193 32.6
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.1e-09 67.4 158 44.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 8.1e-09 65.5 38 81.6
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 5.3e-08 62.8 126 42.9
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.2e-07 61.6 272 44.9
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.5e-07 61.2 312 37.2
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.6e-07 60.5 127 44.9
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 2.2e-06 57.4 120 74.2
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 8.4e-06 55.5 37 70.3


User provided reference genes

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