Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 7.1e-107 390.6 193 100.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.3e-89 333.2 198 85.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.3e-64 248.8 207 67.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-62 243.8 207 66.2
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.5e-53 211.8 198 58.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-49 200.7 189 59.3
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.6e-48 196.1 189 61.4
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 9.7e-48 194.1 183 61.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.8e-47 192.6 206 55.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.3e-47 191.4 199 54.3
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.4e-46 190.3 209 54.5
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.4e-46 189.5 206 53.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.0e-45 186.4 207 54.6
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.5e-45 185.3 210 52.9
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.8e-44 182.2 196 56.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 8.5e-44 181.0 206 52.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.1e-43 180.6 199 52.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.9e-43 179.9 192 51.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 7.2e-43 177.9 181 55.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.2e-42 177.2 202 54.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.4e-41 173.7 182 56.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-40 170.6 185 53.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.2e-40 170.6 201 49.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.5e-40 170.2 201 50.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 4.4e-40 168.7 184 52.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.7e-40 168.3 183 51.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.7e-40 168.3 200 52.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.5e-40 167.9 201 52.2
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 7.5e-40 167.9 191 50.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.7e-39 166.8 205 51.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.8e-39 166.0 206 49.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.7e-39 165.6 162 59.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.3e-39 164.5 186 53.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 8.3e-39 164.5 217 47.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-38 163.3 186 53.2
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 5.4e-38 161.8 201 47.3
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-38 161.8 204 50.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 7.0e-38 161.4 193 49.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.6e-37 160.2 199 48.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.7e-37 159.5 196 50.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.7e-37 159.5 202 50.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.5e-37 158.7 204 49.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.5e-37 158.7 204 49.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.5e-37 158.7 204 49.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-37 158.3 204 49.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.9e-37 158.3 189 50.3
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-36 157.5 204 48.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.3e-36 156.4 196 50.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.0e-36 155.2 202 49.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.0e-36 155.2 197 45.7
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.6e-36 154.8 202 49.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.6e-36 154.8 190 48.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-35 154.1 189 48.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.2e-35 152.1 189 46.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 7.2e-35 151.4 184 47.8
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 7.2e-35 151.4 192 47.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 9.5e-35 151.0 196 47.4
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.1e-34 149.8 183 50.3
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-34 149.4 181 47.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.6e-34 149.1 194 47.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.0e-34 147.9 217 45.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.0e-34 147.9 194 46.9
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.0e-34 147.9 194 46.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.0e-33 147.5 202 44.1
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.0e-33 147.5 191 47.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.4e-33 147.1 206 46.1
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-33 147.1 195 46.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.8e-33 146.7 193 48.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.0e-33 146.0 179 49.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.0e-33 145.6 196 44.4
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.8e-33 144.8 188 47.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 8.9e-33 144.4 223 41.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.4e-32 142.5 193 43.5
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.4e-32 142.5 183 47.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.4e-32 142.5 180 46.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.3e-31 140.6 199 43.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.3e-31 140.6 187 47.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-31 140.6 199 44.2
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 3.7e-31 139.0 215 39.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 4.9e-31 138.7 191 45.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 6.3e-31 138.3 188 46.8
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.3e-31 138.3 198 43.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 8.3e-31 137.9 191 44.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.4e-30 137.1 196 45.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-30 136.7 178 45.5
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-30 136.3 186 47.8
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.4e-30 136.3 193 44.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 4.1e-30 135.6 188 44.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 5.4e-30 135.2 179 45.8
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.0e-30 134.8 186 46.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.0e-30 134.8 186 46.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.2e-30 134.4 190 42.1
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 9.2e-30 134.4 211 45.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-29 134.0 192 45.3
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-29 134.0 196 45.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.2e-29 134.0 192 43.8
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-29 134.0 185 44.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.6e-29 133.7 186 46.2
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.6e-29 133.7 220 45.5
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-29 133.3 186 44.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-29 132.9 185 44.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.7e-29 132.9 199 41.7
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 5.9e-29 131.7 190 43.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.8e-29 131.3 178 44.9
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-28 130.6 177 44.1
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.3e-28 130.6 178 48.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.7e-28 130.2 179 45.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.3e-28 129.8 183 43.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-28 129.4 186 45.2
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-28 128.6 175 44.6
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.0e-28 128.6 184 46.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 5.0e-28 128.6 192 43.8
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.6e-28 128.3 180 44.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 6.6e-28 128.3 174 43.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 6.6e-28 128.3 183 43.7
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-28 127.9 176 42.0
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.5e-27 127.1 190 45.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.5e-27 127.1 204 41.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.9e-27 126.7 184 43.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.6e-27 125.2 190 46.3
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 9.5e-27 124.4 184 42.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.5e-27 124.4 215 42.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-26 124.0 188 46.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.2e-26 124.0 177 48.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-26 123.6 203 41.9
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.8e-26 122.9 179 43.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 3.6e-26 122.5 176 42.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.7e-26 122.1 201 40.8
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 6.1e-26 121.7 174 41.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 6.1e-26 121.7 209 44.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.4e-25 120.6 207 44.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.3e-25 119.8 184 40.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 6.8e-25 118.2 206 36.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.9e-25 117.9 177 42.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.9e-25 117.9 129 51.2
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 8.9e-25 117.9 182 40.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.0e-24 116.7 203 37.4
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.6e-24 116.3 177 40.7
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 4.4e-24 115.5 169 42.6
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.4e-24 115.5 121 52.1
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 9.8e-24 114.4 179 40.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.2e-23 113.2 154 44.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-23 112.5 170 41.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 4.9e-23 112.1 150 43.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 4.9e-23 112.1 198 40.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.9e-23 112.1 212 41.5
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-23 112.1 212 40.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 8.3e-23 111.3 219 35.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.4e-22 110.5 147 44.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.2e-22 109.4 184 41.8
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.0e-21 106.7 126 48.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.5e-21 105.9 112 52.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.6e-21 105.5 174 43.1
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-20 103.6 194 39.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.7e-20 103.6 194 39.2
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.7e-20 103.6 183 38.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-20 103.2 195 39.0
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-20 102.8 160 41.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.9e-20 102.4 166 42.2
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.6e-20 101.3 185 40.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.3e-19 98.2 120 46.7
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.6e-18 95.9 184 37.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.4e-16 89.0 182 35.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.8e-16 88.6 161 36.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.9e-15 86.3 184 37.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 6.4e-15 85.1 189 35.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-14 84.0 156 35.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-14 83.6 186 35.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.1e-14 82.4 158 37.3
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 7.1e-14 81.6 277 30.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.2e-14 81.3 182 34.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-13 80.9 190 32.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-13 80.9 182 33.5
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-13 80.9 143 39.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-13 80.1 182 34.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.1e-13 80.1 144 38.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-13 79.7 190 31.6
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.6e-13 79.0 119 39.5
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.6e-12 75.1 88 50.0
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.2e-09 65.5 64 53.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.6e-08 63.2 81 46.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.1e-06 57.8 59 54.2
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.4e-06 56.6 131 35.1
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 9.2e-06 54.7 213 26.8


User provided reference genes

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