Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G177300 Glycine max HOM05D001070 ORTHO05D010233 2.0e-43 178.7 89 100.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 1.6e-13 79.3 66 66.7
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.8e-10 68.6 69 50.7
TPR.G31143 Trifolium pratense HOM05D001070 ORTHO05D010233 2.8e-10 68.6 64 56.2
Nitab4.5_0000172g2280 Nicotiana tabacum HOM05D001070 ORTHO05D010233 1.2e-08 63.2 79 41.8
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.0e-08 62.4 69 50.7
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 3.5e-08 61.6 76 48.7
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 3.5e-08 61.6 62 56.5
GSVIVG01029582001 Vitis vinifera HOM05D001070 ORTHO05D010233 5.9e-08 60.8 65 49.2
FAN09G0308 Fragaria x ananassa HOM05D001070 ORTHO05D010233 7.8e-08 60.5 51 58.8
Gohir.D01G134260 Gossypium hirsutum HOM05D001070 ORTHO05D010233 1.0e-07 60.1 78 43.6
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-07 58.5 66 51.5
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-07 58.5 66 51.5
HanXRQChr08g0222861 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-07 58.5 66 51.5
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-07 58.5 66 51.5
HanXRQChr15g0465501 Helianthus annuus HOM05D001070 ORTHO05D010233 2.9e-07 58.5 66 51.5
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-07 58.5 66 51.5
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-07 58.5 66 51.5
Ciclev10014004m.g Citrus clementina HOM05D001070 ORTHO05D010233 3.9e-07 58.2 71 46.5
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.9e-07 58.2 71 46.5
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 3.9e-07 58.2 86 44.2
C02p28780 Brassica napus HOM05D001070 ORTHO05D010233 1.9e-06 55.8 70 47.1
C09p25520 Brassica napus HOM05D001070 ORTHO05D010233 1.9e-06 55.8 70 47.1
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-06 55.8 70 47.1
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 1.9e-06 55.8 70 47.1
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.5e-06 55.5 77 40.3
Peaxi162Scf01305g00039 Petunia axillaris HOM05D001070 ORTHO05D010233 2.5e-06 55.5 67 40.3
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.3e-06 55.1 71 39.4
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.3e-06 55.1 71 39.4
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.3e-06 55.1 71 39.4
Solyc00g500191.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.3e-06 55.1 71 39.4
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.3e-06 55.1 71 39.4
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.3e-06 55.1 71 39.4
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 4.3e-06 54.7 68 47.1
Solyc05g016220.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.6e-06 54.3 71 39.4


User provided reference genes

Program Settings