Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 1.0e-307 1059.3 555 100.0
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 9.3e-285 983.0 556 94.1
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 1.5e-271 939.1 555 89.9
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 7.6e-271 936.8 555 89.2
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 3.1e-256 888.3 565 83.0
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 3.4e-255 884.8 565 82.5
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 1.1e-253 879.8 564 82.4
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 3.2e-253 878.2 565 82.3
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 4.4e-250 867.8 565 81.2
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 1.7e-249 865.9 565 82.5
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 1.0e-243 846.7 636 73.4
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 9.8e-226 786.9 559 74.2
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 2.2e-225 785.8 570 72.8
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 2.4e-224 782.3 561 73.1
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 4.1e-224 781.6 571 72.3
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 5.4e-224 781.2 565 72.7
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 5.4e-224 781.2 571 71.5
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 5.4e-224 781.2 571 72.5
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 1.0e-222 776.9 568 71.1
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 3.8e-222 775.0 568 72.4
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 8.6e-222 773.9 563 73.9
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 8.6e-222 773.9 568 72.2
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 1.1e-221 773.5 571 71.6
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 2.5e-221 772.3 571 72.3
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 7.3e-221 770.8 571 71.3
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 2.1e-220 769.2 561 72.5
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 4.7e-220 768.1 563 73.4
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 6.1e-220 767.7 563 73.4
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 1.0e-219 766.9 570 71.4
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 3.0e-219 765.4 570 71.6
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 1.5e-218 763.1 558 71.7
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.6e-218 762.3 578 71.8
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.4e-218 761.9 563 72.8
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 8.3e-217 757.3 559 71.0
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 4.1e-216 755.0 576 69.3
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 9.2e-216 753.8 563 70.2
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 2.7e-215 752.3 572 69.4
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 5.9e-215 751.1 563 69.6
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.9e-213 746.1 563 72.3
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 2.5e-213 745.7 553 70.3
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 2.5e-213 745.7 563 71.6
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 1.4e-211 740.0 563 69.4
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 3.1e-211 738.8 570 69.8
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 6.8e-211 737.6 567 67.2
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 1.5e-210 736.5 571 70.4
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 5.8e-210 734.6 562 68.9
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 2.9e-209 732.3 573 67.5
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 1.6e-207 726.5 571 66.5
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 1.3e-206 723.4 564 67.9
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 1.7e-206 723.0 503 76.1
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 1.9e-205 719.5 560 68.2
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 2.5e-205 719.2 571 66.5
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 5.6e-205 718.0 567 66.7
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 2.8e-204 715.7 559 67.4
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 2.8e-204 715.7 568 68.5
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 3.6e-204 715.3 559 67.6
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 1.4e-203 713.4 559 66.9
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 1.8e-203 713.0 590 63.7
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 3.1e-203 712.2 564 66.5
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 4.0e-203 711.8 569 65.4
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 6.8e-203 711.1 559 67.1
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 2.0e-202 709.5 564 65.4
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 7.5e-202 707.6 584 63.9
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 1.7e-201 706.4 559 66.7
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 3.7e-201 705.3 559 66.7
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 3.2e-200 702.2 559 66.5
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 4.1e-200 701.8 568 65.5
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 7.1e-200 701.0 563 66.6
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 6.6e-198 694.5 570 64.6
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 5.6e-197 691.4 558 65.8
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 2.8e-196 689.1 559 66.5
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 8.1e-196 687.6 557 65.4
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 1.2e-194 683.7 561 64.5
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 2.6e-194 682.6 568 65.1
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 5.8e-194 681.4 557 66.1
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 1.1e-192 677.2 568 64.6
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 3.2e-192 675.6 567 63.0
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 9.2e-192 674.1 557 66.2
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 7.3e-189 664.5 555 64.5
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 7.3e-189 664.5 555 64.5
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 9.6e-189 664.1 555 64.3
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 9.6e-189 664.1 555 64.3
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 2.1e-188 662.9 555 64.3
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 2.2e-185 652.9 560 63.8
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 1.5e-181 640.2 564 61.2
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 2.6e-178 629.4 571 60.4
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 6.4e-177 624.8 531 63.1
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 1.3e-174 617.1 529 63.3
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 5.1e-174 615.1 568 59.3
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 3.3e-173 612.5 574 57.8
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 3.3e-173 612.5 575 56.3
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 1.8e-171 606.7 632 54.4
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 7.6e-170 601.3 483 65.8
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 9.9e-170 600.9 566 57.4
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 1.0e-158 564.3 513 59.5
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 2.7e-151 539.7 399 68.2
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 4.2e-128 462.6 447 58.6
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 2.6e-117 426.8 573 42.1
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 1.2e-114 417.9 405 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 1.7e-113 414.1 550 43.1
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 2.4e-99 367.1 590 39.0
MD12G1060300 Malus domestica HOM05D006621 ORTHO05D008425 7.8e-98 362.1 224 78.6
TAR636G0143 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.2e-95 354.8 235 75.3
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 1.6e-95 354.4 594 36.7
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 2.1e-95 354.0 308 64.6
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 4.9e-92 342.8 557 38.2
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.2e-90 338.2 300 64.0
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.1e-86 325.1 251 72.1
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 8.1e-71 272.3 265 54.7
SEGI_27578 Sequoiadendron giganteum HOM05D006621 ORTHO05D008425 7.8e-66 255.8 174 68.4
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 8.1e-63 245.7 368 45.9
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 4.8e-55 219.9 152 76.3
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.8e-54 218.0 576 32.6
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 2.9e-52 210.7 583 29.3
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 2.2e-39 167.9 157 66.2
Lsat_1_v5_gn_5_170341 Lactuca sativa HOM05D006621 ORTHO05D008425 2.7e-34 151.0 151 55.0
FAN02G0678 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.5e-27 127.9 71 80.3
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 2.4e-14 84.7 56 80.4
THA.LOC104799305 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 3.0e-09 67.8 64 56.2
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 3.4e-08 64.3 66 47.0


User provided reference genes

Program Settings