Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.0e-160 570.1 300 100.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.8e-140 501.1 304 88.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.7e-139 499.6 304 88.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.4e-125 452.6 301 80.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 8.4e-123 444.1 303 79.5
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-122 443.4 303 79.2
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.7e-121 439.1 273 88.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.3e-120 436.8 300 77.7
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.3e-118 430.3 300 78.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.8e-118 429.1 304 77.0
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.8e-118 428.3 300 77.0
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 7.6e-116 421.0 296 77.4
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.2e-114 415.2 294 75.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.2e-114 415.2 306 74.2
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.5e-113 412.1 264 78.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 4.6e-113 411.8 264 78.8
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 3.3e-111 405.6 266 78.2
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 7.4e-111 404.4 259 79.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 2.1e-110 402.9 266 77.4
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.1e-110 402.9 255 80.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.8e-110 401.7 305 71.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.4e-109 399.4 302 71.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 2.4e-109 399.4 302 71.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 5.3e-109 398.3 303 71.0
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 4.5e-108 395.2 303 71.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 7.6e-108 394.4 305 70.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.3e-107 393.7 261 77.0
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.7e-107 393.3 283 72.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.2e-107 392.9 300 71.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.9e-107 392.5 305 69.8
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.9e-107 392.5 305 69.8
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 6.5e-107 391.3 308 68.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 9.3e-106 387.5 304 69.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-105 387.1 263 76.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.0e-104 384.0 258 76.0
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.3e-104 383.6 305 68.2
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.3e-104 382.9 267 74.5
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 3.9e-104 382.1 258 76.4
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 3.9e-104 382.1 298 68.8
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.9e-104 382.1 266 75.6
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.9e-104 382.1 266 75.6
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 5.1e-104 381.7 308 66.2
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 5.1e-104 381.7 334 65.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 6.7e-104 381.3 259 76.1
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.1e-103 380.6 302 68.2
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.1e-103 380.6 303 69.3
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.9e-103 379.8 301 69.1
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.3e-103 379.0 263 74.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 5.7e-103 378.3 282 70.9
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 7.4e-103 377.9 253 75.5
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 7.4e-103 377.9 299 68.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.8e-102 375.2 263 73.0
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.8e-102 375.2 292 68.8
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 6.3e-102 374.8 263 71.1
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.2e-102 374.4 263 72.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.8e-101 373.2 290 68.6
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.8e-101 373.2 252 74.6
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.4e-101 372.9 312 66.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 4.1e-101 372.1 256 73.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.0e-101 370.9 254 72.4
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.0e-100 369.8 252 74.2
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.4e-100 369.0 297 67.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.9e-100 368.2 296 68.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.7e-99 366.7 314 63.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.2e-99 366.3 301 66.1
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.2e-99 366.3 301 66.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.2e-99 366.3 268 69.8
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.5e-99 364.8 302 66.6
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.2e-98 362.5 310 64.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-98 362.1 271 67.9
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.2e-98 362.1 283 66.1
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 7.2e-98 361.3 299 65.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.6e-97 360.1 301 63.8
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.6e-97 360.1 236 76.7
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 2.1e-97 359.8 280 65.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.7e-97 359.4 297 62.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.0e-96 357.5 314 63.7
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.4e-96 357.1 275 65.8
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.8e-96 356.7 293 64.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-96 356.7 280 65.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.3e-96 356.3 285 66.7
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 5.1e-96 355.1 292 62.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 5.1e-96 355.1 301 63.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 5.1e-96 355.1 283 67.5
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 6.7e-96 354.8 312 65.4
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.7e-96 354.8 236 72.0
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 8.8e-96 354.4 284 68.3
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-95 354.0 299 64.5
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.0e-95 353.2 286 63.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.5e-95 352.8 275 70.2
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.3e-95 352.4 255 69.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.7e-95 351.7 296 62.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.7e-95 351.7 296 62.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 2.2e-94 349.7 260 68.5
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.8e-94 349.4 282 67.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 3.7e-94 349.0 285 65.6
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 6.3e-94 348.2 296 62.2
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.4e-93 346.3 290 64.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.4e-93 346.3 260 70.0
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.4e-93 346.3 350 57.1
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.4e-93 346.3 296 64.2
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 6.9e-93 344.7 286 63.3
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.9e-93 344.7 296 63.9
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.1e-93 344.4 259 66.8
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-92 344.0 273 68.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.3e-91 340.5 292 63.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 2.9e-91 339.3 236 71.2
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.2e-90 335.9 247 72.1
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.0e-87 326.6 394 50.0
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 2.0e-87 326.6 281 63.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.0e-87 326.6 308 60.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.4e-87 325.5 287 61.3
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 7.4e-87 324.7 311 60.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.8e-86 322.8 352 53.7
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.2e-86 321.2 333 57.1
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.1e-85 318.9 337 56.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-84 317.0 252 65.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.6e-84 316.2 258 64.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.0e-83 314.3 258 63.6
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.8e-83 312.4 256 64.8
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 5.0e-83 312.0 248 66.9
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 6.5e-83 311.6 240 65.0
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.1e-82 310.8 246 62.6
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.9e-82 310.1 240 67.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.5e-82 309.7 288 59.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.2e-82 308.9 275 61.8
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.7e-78 297.0 294 58.5
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.1e-74 284.3 293 56.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 4.2e-74 282.3 293 53.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.6e-73 279.3 257 64.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-72 276.6 227 64.8
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-67 261.2 222 60.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.4e-61 240.0 289 45.7
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.4e-61 238.8 174 67.2
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.6e-60 237.3 145 82.8
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.5e-60 236.1 249 51.0
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 6.6e-59 231.9 444 36.9
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.5e-58 229.9 287 44.6
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 4.3e-58 229.2 223 58.7
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.4e-53 213.4 235 47.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 9.2e-53 211.5 131 80.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 9.2e-53 211.5 236 45.8
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.9e-51 206.1 297 44.1
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.8e-48 197.2 143 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 5.4e-45 185.7 189 50.3
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.4e-37 160.2 142 60.6
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 8.6e-27 125.2 192 42.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 8.4e-22 108.6 115 60.0
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.6e-20 102.8 79 64.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.0e-19 101.7 107 45.8
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.9e-14 83.6 70 61.4
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 6.0e-12 75.9 70 47.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.8e-11 74.3 187 35.3
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.9e-11 73.2 72 54.2
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 6.7e-11 72.4 52 65.4
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 6.2e-09 65.9 146 33.6
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.1e-09 65.5 52 71.2
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 5.3e-08 62.8 102 37.3
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 5.8e-07 59.3 216 26.4
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 2.9e-06 57.0 207 28.0
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 3.8e-06 56.6 63 61.9


User provided reference genes

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