Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.2e-189 666.4 349 100.0
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 6.5e-175 617.5 351 87.7
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 4.8e-154 548.1 351 80.3
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 6.9e-153 544.3 352 80.1
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.6e-149 531.9 351 74.4
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 3.6e-149 531.9 352 73.6
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 6.1e-149 531.2 351 78.3
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 6.3e-146 521.2 358 75.4
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 1.6e-141 506.5 351 69.8
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 2.1e-141 506.1 351 68.7
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 6.1e-141 504.6 351 68.7
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 8.0e-141 504.2 351 68.4
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 8.0e-141 504.2 351 69.2
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 1.0e-140 503.8 351 68.7
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 3.0e-140 502.3 352 73.6
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.0e-140 502.3 351 71.8
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 6.7e-140 501.1 351 69.2
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 6.7e-140 501.1 351 69.2
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 8.8e-140 500.7 353 68.3
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 1.2e-139 500.4 361 66.2
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 2.0e-139 499.6 361 66.2
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 3.3e-139 498.8 354 68.6
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 7.5e-139 497.7 354 68.4
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.3e-138 496.9 351 72.9
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.3e-138 496.9 356 67.7
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.7e-138 496.5 360 65.8
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.7e-138 496.5 351 72.9
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-138 496.1 359 67.1
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 2.2e-138 496.1 353 70.0
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.8e-138 495.7 351 72.6
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 2.8e-138 495.7 355 71.8
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 4.8e-138 495.0 353 68.8
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.8e-138 495.0 356 67.1
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 6.3e-138 494.6 361 69.0
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 1.1e-137 493.8 360 70.8
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.1e-137 493.8 360 65.0
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 1.1e-137 493.8 351 68.4
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 1.4e-137 493.4 354 72.0
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.8e-137 493.0 356 67.4
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 1.8e-137 493.0 351 68.4
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-137 492.7 360 70.8
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 4.1e-137 491.9 355 69.9
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 4.1e-137 491.9 352 71.9
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 5.3e-137 491.5 357 72.3
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 7.0e-137 491.1 351 67.2
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 7.0e-137 491.1 351 67.5
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 9.1e-137 490.7 355 66.8
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.2e-136 490.3 352 69.3
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.2e-136 490.3 355 66.8
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 1.2e-136 490.3 356 72.2
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 2.0e-136 489.6 363 70.2
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 2.0e-136 489.6 360 66.7
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 3.5e-136 488.8 360 68.3
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 4.5e-136 488.4 355 72.1
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 7.7e-136 487.6 359 68.8
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 7.7e-136 487.6 351 67.5
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 7.7e-136 487.6 353 70.5
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 1.0e-135 487.3 354 71.8
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.3e-135 486.9 351 70.9
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 1.7e-135 486.5 358 71.2
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 2.2e-135 486.1 358 72.3
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 2.9e-135 485.7 351 67.5
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.9e-135 485.7 351 66.4
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 3.8e-135 485.3 394 61.2
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 8.5e-135 484.2 361 69.8
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 8.5e-135 484.2 353 68.0
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 1.1e-134 483.8 354 70.9
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 2.1e-133 479.6 351 66.7
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 2.1e-133 479.6 351 67.0
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 2.1e-133 479.6 351 65.5
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.0e-132 477.2 351 65.8
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.8e-132 476.5 351 64.4
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 2.3e-132 476.1 353 64.9
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 3.0e-132 475.7 355 67.0
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 6.8e-132 474.6 351 65.2
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 8.8e-132 474.2 355 65.4
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.2e-131 473.8 355 69.9
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 2.0e-131 473.0 352 63.6
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 2.0e-131 473.0 356 65.4
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 2.6e-131 472.6 365 68.8
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 2.6e-131 472.6 351 64.4
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 4.4e-131 471.9 354 64.4
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 4.4e-131 471.9 351 63.2
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 5.7e-131 471.5 351 64.1
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 9.8e-131 470.7 355 64.5
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.3e-130 470.3 351 69.5
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 3.7e-130 468.8 352 63.4
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 4.8e-130 468.4 353 69.4
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 4.8e-130 468.4 356 64.0
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 4.8e-130 468.4 351 63.8
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 4.8e-130 468.4 352 62.8
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 4.8e-130 468.4 352 69.0
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 6.3e-130 468.0 351 64.1
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.1e-129 467.2 352 65.3
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 9.1e-129 464.2 355 65.6
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 1.6e-128 463.4 353 69.4
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 3.5e-128 462.2 357 67.8
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 4.5e-128 461.8 351 63.8
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 7.7e-128 461.1 351 62.7
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 2.9e-127 459.1 351 68.7
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 2.9e-127 459.1 364 62.6
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 3.8e-127 458.8 351 63.2
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 3.8e-127 458.8 351 62.7
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 1.5e-126 456.8 343 68.8
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 3.2e-126 455.7 356 65.4
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 3.2e-126 455.7 358 62.3
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 7.2e-126 454.5 355 62.5
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 1.2e-125 453.8 358 62.3
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 2.1e-125 453.0 352 62.8
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 6.1e-125 451.4 352 63.1
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 1.2e-123 447.2 352 63.1
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 1.5e-123 446.8 351 62.4
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 2.0e-123 446.4 351 60.4
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.0e-123 446.4 353 62.6
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 4.9e-122 441.8 352 59.1
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.3e-119 433.7 355 60.6
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 3.8e-119 432.2 332 59.6
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.6e-119 431.0 347 61.4
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 2.5e-118 429.5 353 59.2
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 1.0e-116 424.1 359 63.5
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 1.0e-116 424.1 297 74.1
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 2.3e-116 422.9 338 61.8
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 2.9e-114 416.0 356 56.7
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 8.3e-114 414.5 361 57.1
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 5.9e-112 408.3 364 54.9
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.7e-111 406.8 351 55.8
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 6.6e-111 404.8 300 70.7
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.1e-110 404.1 351 55.0
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.2e-109 400.6 353 55.8
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.8e-109 399.4 288 67.0
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 4.7e-109 398.7 353 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 1.4e-105 387.1 351 53.3
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 4.6e-96 355.5 325 58.8
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.7e-95 353.6 353 55.5
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 7.3e-94 348.2 294 58.5
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.1e-92 342.8 274 67.2
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 1.3e-90 337.4 353 50.7
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 6.2e-77 292.0 214 73.8
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 5.4e-73 278.9 349 45.0
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 4.9e-66 255.8 242 57.9
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.6e-61 240.7 175 74.3
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.8e-61 240.0 273 50.9
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 8.2e-61 238.4 350 39.1
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 8.4e-58 228.4 354 40.4
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 6.7e-55 218.8 156 64.7
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 8.2e-53 211.8 126 78.6
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 3.1e-52 209.9 128 74.2
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.0e-51 207.2 115 82.6
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 6.5e-34 149.1 130 67.7
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.6e-30 137.1 160 48.1
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.1e-28 131.7 85 65.9
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.4e-28 130.6 85 65.9
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.3e-28 129.4 85 64.7
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 9.1e-28 128.6 107 60.7
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.7e-26 124.4 85 62.4
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 4.7e-24 116.3 191 36.6
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.2e-23 112.8 58 91.4
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 1.1e-20 105.1 138 44.9
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 2.4e-20 104.0 63 76.2
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 4.5e-19 99.8 58 79.3
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 4.5e-19 99.8 58 79.3
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 5.0e-18 96.3 185 37.8
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 1.5e-17 94.7 76 61.8
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 2.5e-17 94.0 130 36.2
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 9.4e-17 92.0 60 71.7
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 1.2e-16 91.7 55 76.4
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.1e-16 89.4 48 77.1
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.6e-14 84.0 59 62.7
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 3.4e-14 83.6 49 75.5
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 3.1e-12 77.0 75 45.3
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 7.7e-11 72.4 127 29.9
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.5e-09 68.2 67 50.7
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 7.2e-09 65.9 61 49.2
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 6.1e-08 62.8 50 54.0
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 8.0e-08 62.4 87 41.4
arahy.Tifrunner.gnm1.ann1.5I9U23 Arachis hypogaea HOM05D003641 ORTHO05D085625 1.0e-07 62.0 138 44.2
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 8.9e-07 58.9 64 43.8


User provided reference genes

Program Settings