Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 4.5e-54 214.9 164 100.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 1.3e-37 160.2 148 85.1
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 6.2e-35 151.4 164 59.8
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 5.0e-29 131.7 165 59.4
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 5.4e-23 111.7 71 83.1
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.6e-22 110.2 70 85.7
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.6e-22 110.2 71 84.5
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 3.0e-21 105.9 75 77.3
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.9e-21 105.5 83 68.7
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.1e-20 104.0 71 78.9
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.9e-20 103.2 83 67.5
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.5e-20 102.8 77 70.1
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 7.3e-20 101.3 76 69.7
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 7.3e-20 101.3 140 47.1
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 7.3e-20 101.3 65 86.2
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 7.3e-20 101.3 65 86.2
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.6e-19 100.1 72 73.6
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.6e-19 100.1 79 68.4
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.6e-19 100.1 75 70.7
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 2.8e-19 99.4 75 69.3
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 4.7e-19 98.6 75 69.3
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 6.2e-19 98.2 72 68.1
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 1.8e-18 96.7 75 70.7
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 1.8e-18 96.7 75 70.7
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 2.4e-18 96.3 76 67.1
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 2.4e-18 96.3 70 75.7
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 4.0e-18 95.5 77 68.8
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.0e-18 95.5 72 73.6
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 5.2e-18 95.1 87 65.5
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 5.2e-18 95.1 77 68.8
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 5.2e-18 95.1 77 71.4
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 6.8e-18 94.7 76 65.8
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 6.8e-18 94.7 77 68.8
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 8.9e-18 94.4 76 69.7
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 8.9e-18 94.4 73 75.3
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.2e-17 94.0 78 69.2
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.5e-17 93.6 73 74.0
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.5e-17 93.6 73 74.0
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.5e-17 93.6 71 77.5
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 1.5e-17 93.6 77 68.8
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.0e-17 93.2 72 72.2
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.6e-17 92.8 81 67.9
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 3.4e-17 92.4 75 69.3
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 3.4e-17 92.4 80 63.8
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 4.4e-17 92.0 70 74.3
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 5.8e-17 91.7 81 64.2
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 5.8e-17 91.7 81 63.0
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 7.6e-17 91.3 77 64.9
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 9.9e-17 90.9 73 68.5
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 1.3e-16 90.5 77 63.6
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 1.3e-16 90.5 76 67.1
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 1.3e-16 90.5 72 69.4
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.3e-16 90.5 72 70.8
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.7e-16 90.1 68 77.9
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.7e-16 90.1 68 77.9
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 2.2e-16 89.7 79 67.1
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.2e-16 89.7 67 76.1
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 2.9e-16 89.4 75 72.0
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 3.8e-16 89.0 77 64.9
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 4.9e-16 88.6 82 62.2
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 4.9e-16 88.6 73 68.5
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 4.9e-16 88.6 76 64.5
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 6.4e-16 88.2 70 70.0
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.1e-15 87.4 70 68.6
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.1e-15 87.4 70 68.6
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 4.2e-15 85.5 67 68.7
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.6e-14 83.6 64 71.9
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 2.1e-14 83.2 70 67.1
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 6.0e-14 81.6 64 70.3
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 7.8e-14 81.3 75 62.7
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.3e-13 80.5 64 70.3
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 1.3e-13 80.5 64 70.3
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.3e-13 80.5 64 70.3
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 6.6e-13 78.2 64 68.8
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 1.1e-12 77.4 59 69.5
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 2.5e-12 76.3 62 66.1
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.3e-12 75.9 67 68.7
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 3.3e-12 75.9 67 68.7
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.3e-12 75.9 67 68.7
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.3e-12 75.5 67 68.7
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.1e-11 73.2 59 62.7
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 1.8e-10 70.1 56 60.7
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 2.4e-10 69.7 69 58.0
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.1e-10 69.3 50 68.0
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 1.2e-09 67.4 62 62.9
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 9.9e-09 64.3 69 52.2
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 4.9e-08 62.0 62 58.1
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 8.4e-08 61.2 59 62.7


User provided reference genes

Program Settings