Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 7.5e-186 653.7 323 100.0
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 5.3e-139 498.0 303 82.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 8.2e-132 474.2 303 78.9
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 4.1e-131 471.9 303 78.2
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 6.9e-131 471.1 303 78.2
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 3.3e-117 425.6 284 76.4
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 3.9e-110 402.1 272 75.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 5.2e-110 401.7 291 67.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.5e-109 400.2 295 65.4
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.8e-108 396.0 292 67.1
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.3e-108 394.8 292 67.1
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.1e-107 394.0 292 67.5
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.4e-107 393.7 294 66.3
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 5.3e-107 391.7 297 65.7
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 5.3e-107 391.7 292 66.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.5e-106 389.0 294 65.0
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.9e-106 388.3 295 63.1
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.0e-105 387.5 293 63.8
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.0e-105 387.5 291 66.0
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.3e-105 387.1 294 63.6
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 5.0e-105 385.2 284 69.7
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 8.5e-105 384.4 295 63.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.1e-103 379.8 297 61.6
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.1e-103 379.8 297 63.3
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 8.0e-103 377.9 294 64.3
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.8e-102 376.7 294 61.6
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.3e-102 376.3 295 64.1
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.0e-102 375.9 294 63.9
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.4e-101 372.1 294 62.9
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.7e-101 371.7 294 63.3
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 7.5e-101 371.3 224 85.7
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 9.7e-101 370.9 292 62.3
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.3e-100 370.5 293 59.7
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-100 370.5 292 62.0
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 6.3e-100 368.2 294 61.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.1e-99 367.5 293 59.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.4e-99 366.3 293 60.1
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 9.1e-99 364.4 310 58.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 9.1e-99 364.4 309 58.9
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.6e-98 363.6 294 60.9
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.5e-98 362.5 294 60.5
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.9e-98 361.7 294 60.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.0e-97 360.9 294 62.2
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.7e-97 360.1 296 57.8
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.8e-97 359.0 318 58.5
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 6.5e-97 358.2 289 59.5
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.9e-96 356.7 243 73.7
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 5.5e-96 355.1 293 58.4
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-95 354.0 295 59.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.7e-95 352.1 307 56.4
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 4.7e-95 352.1 291 60.8
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 3.0e-94 349.4 293 58.4
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.2e-94 348.6 310 55.5
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 6.8e-94 348.2 310 55.5
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 8.8e-94 347.8 294 59.9
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.6e-93 346.3 293 58.7
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 7.5e-93 344.7 291 59.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.8e-92 342.8 293 56.0
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 4.8e-92 342.0 210 81.4
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.1e-91 340.9 294 58.5
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.8e-91 340.1 288 59.4
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.8e-91 340.1 280 59.6
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-90 337.4 299 57.2
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.6e-90 337.0 309 53.4
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.6e-90 337.0 296 56.8
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.0e-90 336.7 297 55.9
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.5e-90 335.9 291 57.4
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.0e-89 334.3 295 56.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 7.2e-88 328.2 277 58.5
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.2e-87 327.4 293 56.7
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.2e-87 327.4 328 52.4
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 3.6e-87 325.9 268 59.7
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.3e-86 323.2 298 54.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 8.9e-86 321.2 268 59.7
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.2e-85 320.9 361 47.1
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.5e-85 320.5 293 54.3
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.6e-85 319.7 290 56.6
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.3e-84 317.4 283 54.8
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.4e-83 313.9 284 56.3
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.9e-82 308.5 305 52.8
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.5e-80 303.1 185 82.7
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.5e-80 303.1 272 55.1
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 9.5e-80 301.2 238 62.2
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 6.1e-79 298.5 293 51.5
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 4.4e-77 292.4 292 51.7
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 4.6e-74 282.3 206 66.0
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.3e-73 280.8 230 59.6
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.3e-70 270.0 201 62.7
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 2.6e-69 266.5 271 49.8
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 4.4e-69 265.8 202 62.9
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 4.1e-67 259.2 229 58.5
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 3.5e-66 256.1 227 56.4
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.3e-65 254.2 295 45.1
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 8.6e-65 251.5 242 53.7
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.8e-63 246.5 198 57.6
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.1e-62 244.6 292 45.5
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 8.9e-62 241.5 171 75.4
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 9.2e-59 231.5 302 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 2.1e-58 230.3 289 40.5
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 9.5e-56 221.5 186 57.5
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.2e-55 221.1 279 45.9
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-54 218.0 175 60.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.5e-50 203.0 201 53.7
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.5e-48 196.8 173 57.8
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.4e-43 181.0 108 85.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 3.5e-42 176.4 218 43.6
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 5.8e-37 159.1 97 80.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 8.1e-31 138.7 323 32.2
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 1.8e-30 137.5 85 78.8
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.8e-30 137.5 124 56.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 7.6e-29 132.1 80 76.2
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.1e-27 128.3 120 55.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 9.3e-27 125.2 80 68.8
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.0e-25 121.7 91 60.4
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 2.3e-25 120.6 128 46.9
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.1e-24 118.2 81 61.7
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.5e-24 117.9 83 65.1
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-24 117.5 147 42.9
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.8e-23 113.6 79 64.6
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 4.8e-23 112.8 81 66.7
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 8.4e-20 102.1 67 67.2
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.5e-19 100.5 190 30.5
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.2e-18 98.2 122 43.4
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.1e-18 97.4 98 49.0
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.7e-16 88.6 90 52.2
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-14 84.3 55 69.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.4e-14 84.0 72 59.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.1e-14 83.6 162 32.7
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.0e-12 78.6 52 65.4
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 5.5e-11 72.8 52 61.5
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 6.3e-07 59.3 57 43.9


User provided reference genes

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